Genomic Location: Ap6:32556549...32564085
NR annotation: XP_020626680.1, zinc metalloproteinase nas-4-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap6.3148 |
| Transcript |
| evm.model.Ap6.3148 |
| Protein |
| evm.model.Ap6.3148 |
| UniProt accession | Description |
|---|---|
| Q20191 | Zinc metalloproteinase nas-13 OS=Caenorhabditis elegans OX=6239 GN=nas-13 PE=2 SV=5 |
| P55112 | Zinc metalloproteinase nas-4 OS=Caenorhabditis elegans OX=6239 GN=nas-4 PE=2 SV=4 |
| P42674 | Blastula protease 10 OS=Paracentrotus lividus OX=7656 GN=BP10 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004677 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00051 all species → | Kringle | Kringle domain | Domain | Interproscan |
| PF01400 all species → | Astacin | Astacin (Peptidase family M12A) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000001 all species → | Domain | Kringle | Interproscan |
| IPR038178 all species → | Homologous_superfamily | Kringle superfamily | Interproscan |
| IPR024079 all species → | Homologous_superfamily | Metallopeptidase, catalytic domain superfamily | Interproscan |
| IPR006026 all species → | Domain | Peptidase, metallopeptidase | Interproscan |
| IPR013806 all species → | Homologous_superfamily | Kringle-like fold | Interproscan |
| IPR001506 all species → | Domain | Peptidase M12A | Interproscan |
| IPR018056 all species → | Conserved_site | Kringle, conserved site | Interproscan |
| IPR034035 all species → | Domain | Astacin-like metallopeptidase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10127 all species → | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008237 all species → | Molecular Function | metallopeptidase activity | Interproscan |
| GO:0004222 all species → | Molecular Function | metalloendopeptidase activity | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
evm.model.Ap6.3148.Transcript abundance of evm.model.Ap6.3148 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
