Gene detail

Detailed information of evm.model.Ap6.3150 in Astrangia poculata

Genomic Location: Ap6:32575999...32594553
NR annotation: XP_020626629.1, inositol polyphosphate 5-phosphatase OCRL-1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.3150

atggatcttgttgcaagagtgcagaaagaactcacgagcgaggataagtgcataaaatgcaccacaggagttctgttaaaggacaacaacaaagttggctgcctcattgctctcgcaagaaatctggatactggattgatcatctttcagtggaacagtgaatcatcttttcaagaaaagtctctagatgtcctgtatgttttggccatccgcggacctttttcatatgcaactgttgctgatcaaccaactagtgaagatagtagcaaagaaggtgttgttaggtttcaaatcttgactgatgaccagacaaagcttgtttttgaggtgaaaaaggatgtgcaaggaaagaatttcttacttgaattgaacaaagccattggagcttatagacaaagggctcatatggttggtgtgcctgaatttaaatggcttgagaaatatcagcagctgattggaagaaaaagttttataaacgtggatggctggccttggaatcaccttgaggaagcaagctcaagtggattagaagttgtaacagccacagaatccaaactagatgacgcagcactggacgtgtttggaatgccaggcttttctccatcacccaccatccacccatcattgtcgtcagcaagtctaacggcatcagatgaagtagataagggtgctactgactcaccagcactacccagaagatctatccttccaactagctttggtgccagggatgggtttattaaactccacatggctgcaagagaatcagaatatactcatatcaaaaagctgaaaatctttgttggtacatggaatgtcaatggccagtatcctgctgaggaagtttcaccgtggcttgcagctgatcatgacccacctgatgtgttcagcctgggcttccaagagcttgatctcagtgctgaaacattgctaaaaaatgttactccaagagaggatgagtggctaaagatggccgagcaaggactccaccctaaagcccagtacactaaggtgaagaccattcgtctggttggcattttactgatggtgtttgttaagaacaagtatctgccttatgttactgaagttgatgctgaaactgtagctactggcatcatgggtcttatgggtaacaagggaggtgtagccattaggatgcagatccacaacacaagtatttgttttgtaaattcgcatctcgcagctcacacagaagaatttgagagaaggaaccaggactacagagatattctaagcaagctggagtttaatgggtctcatggttcacctttcatcactgatcatgaggctgtcttctggttgggagacttaaattacagagttagtgacatggatacagatgtggtgagacgactggcagacaaaggagagtacgaggaactcctagtcaatgatcagctcatcaaacaaaagaatgataagaaatgttttaaaggattccaagaaggccgcatcaagttcaaaccaacttataaatatgatccaggaacagataactgggacacgagcgaaaaaggtcgtgcccctgcctggtgtgatcgtattttatggaggggatctcaagttaaacagttggaatatcgtagtcataataaacttaaactcagtgaccataagcctgtcagctctttgttcgaagtcggggtcaaagtggtgaacgtggagaaagaaagacaagtaatggaagatgttatccgaactctggacaggcatgaaaatgaaaacctacctcaagtacaactaggcaccacagagattattttcaaagatgtccaatttcttgaaaaacagacagccaccttggacattgttaacactggtcaggtagcagctcagtttgctttcatagccaagttagacgagactgagtactgcaagccttggttgacagtcaagccttatatgggaattataatgccaggatgcaccaaacaggttcgtctgactgtgtatgtcgacaaagaatctgcaagagccatgaactctggtgacgagaaactggaagatattctcgttctacacttggaaggaggaaaagacttttttgtgtcggtcagcggtaactatcttccaagtgtgttcggctcgtccattgaggcgttagtacgcatgtatggacctatcagggacgttcctgtagcaacactggtagacttggagcatatcaacttagcaagtccatcgagctcatcagacacccaacctctagaaattccgaaagagctgtggcttttaacagatcatttatttaactttggcatgcgtcaggagaatatcctcaggcagtctgggttcgaggaagacttagaagagatcaggtcacatttagattgttgccgtggcggtaaactgcctggcagtatttactccatagcagaagctttacttattttcctagaagcgttacctgagcctgtgattccttatgcgttttatcagagagcacttgagtgttgcaataactacatgctctgtaaacagttaatatttcagatgcctcaaagccaccggaatgtgttcacgtacatcagtgctttcctgagagaactgttactacattctaatgataaccaactggacgccaaaactttggctaccctgtttggtaccctgtttttaagagcgccaaaaagcaaggaggcggggcttagcaagaaaactgtcaatcaactgacgcagaagaaagcgcgattcatgtaccatttcctagtcaacgaatttggtcctgactga

Transcript

evm.model.Ap6.3150

ATGGATCTTGTTGCAAGAGTGCAGAAAGAACTCACGAGCGAGGATAAGTGCATAAAATGCACCACAGGAGTTCTGTTAAAGGACAACAACAAAGTTGGCTGCCTCATTGCTCTCGCAAGAAATCTGGATACTGGATTGATCATCTTTCAGTGGAACAGTGAATCATCTTTTCAAGAAAAGTCTCTAGATGTCCTGTATGTTTTGGCCATCCGCGGACCTTTTTCATATGCAACTGTTGCTGATCAACCAACTAGTGAAGATAGTAGCAAAGAAGGTGTTGTTAGGTTTCAAATCTTGACTGATGACCAGACAAAGCTTGTTTTTGAGGTGAAAAAGGATGTGCAAGGAAAGAATTTCTTACTTGAATTGAACAAAGCCATTGGAGCTTATAGACAAAGGGCTCATATGGTTGGTGTGCCTGAATTTAAATGGCTTGAGAAATATCAGCAGCTGATTGGAAGAAAAAGTTTTATAAACGTGGATGGCTGGCCTTGGAATCACCTTGAGGAAGCAAGCTCAAGTGGATTAGAAGTTGTAACAGCCACAGAATCCAAACTAGATGACGCAGCACTGGACGTGTTTGGAATGCCAGGCTTTTCTCCATCACCCACCATCCACCCATCATTGTCGTCAGCAAGTCTAACGGCATCAGATGAAGTAGATAAGGGTGCTACTGACTCACCAGCACTACCCAGAAGATCTATCCTTCCAACTAGCTTTGGTGCCAGGGATGGGTTTATTAAACTCCACATGGCTGCAAGAGAATCAGAATATACTCATATCAAAAAGCTGAAAATCTTTGTTGGTACATGGAATGTCAATGGCCAGTATCCTGCTGAGGAAGTTTCACCGTGGCTTGCAGCTGATCATGACCCACCTGATGTGTTCAGCCTGGGCTTCCAAGAGCTTGATCTCAGTGCTGAAACATTGCTAAAAAATGTTACTCCAAGAGAGGATGAGTGGCTAAAGATGGCCGAGCAAGGACTCCACCCTAAAGCCCAGTACACTAAGGTGAAGACCATTCGTCTGGTTGGCATTTTACTGATGGTGTTTGTTAAGAACAAGTATCTGCCTTATGTTACTGAAGTTGATGCTGAAACTGTAGCTACTGGCATCATGGGTCTTATGGGTAACAAGGGAGGTGTAGCCATTAGGATGCAGATCCACAACACAAGTATTTGTTTTGTAAATTCGCATCTCGCAGCTCACACAGAAGAATTTGAGAGAAGGAACCAGGACTACAGAGATATTCTAAGCAAGCTGGAGTTTAATGGGTCTCATGGTTCACCTTTCATCACTGATCATGAGGCTGTCTTCTGGTTGGGAGACTTAAATTACAGAGTTAGTGACATGGATACAGATGTGGTGAGACGACTGGCAGACAAAGGAGAGTACGAGGAACTCCTAGTCAATGATCAGCTCATCAAACAAAAGAATGATAAGAAATGTTTTAAAGGATTCCAAGAAGGCCGCATCAAGTTCAAACCAACTTATAAATATGATCCAGGAACAGATAACTGGGACACGAGCGAAAAAGGTCGTGCCCCTGCCTGGTGTGATCGTATTTTATGGAGGGGATCTCAAGTTAAACAGTTGGAATATCGTAGTCATAATAAACTTAAACTCAGTGACCATAAGCCTGTCAGCTCTTTGTTCGAAGTCGGGGTCAAAGTGGTGAACGTGGAGAAAGAAAGACAAGTAATGGAAGATGTTATCCGAACTCTGGACAGGCATGAAAATGAAAACCTACCTCAAGTACAACTAGGCACCACAGAGATTATTTTCAAAGATGTCCAATTTCTTGAAAAACAGACAGCCACCTTGGACATTGTTAACACTGGTCAGGTAGCAGCTCAGTTTGCTTTCATAGCCAAGTTAGACGAGACTGAGTACTGCAAGCCTTGGTTGACAGTCAAGCCTTATATGGGAATTATAATGCCAGGATGCACCAAACAGGTTCGTCTGACTGTGTATGTCGACAAAGAATCTGCAAGAGCCATGAACTCTGGTGACGAGAAACTGGAAGATATTCTCGTTCTACACTTGGAAGGAGGAAAAGACTTTTTTGTGTCGGTCAGCGGTAACTATCTTCCAAGTGTGTTCGGCTCGTCCATTGAGGCGTTAGTACGCATGTATGGACCTATCAGGGACGTTCCTGTAGCAACACTGGTAGACTTGGAGCATATCAACTTAGCAAGTCCATCGAGCTCATCAGACACCCAACCTCTAGAAATTCCGAAAGAGCTGTGGCTTTTAACAGATCATTTATTTAACTTTGGCATGCGTCAGGAGAATATCCTCAGGCAGTCTGGGTTCGAGGAAGACTTAGAAGAGATCAGGTCACATTTAGATTGTTGCCGTGGCGGTAAACTGCCTGGCAGTATTTACTCCATAGCAGAAGCTTTACTTATTTTCCTAGAAGCGTTACCTGAGCCTGTGATTCCTTATGCGTTTTATCAGAGAGCACTTGAGTGTTGCAATAACTACATGCTCTGTAAACAGTTAATATTTCAGATGCCTCAAAGCCACCGGAATGTGTTCACGTACATCAGTGCTTTCCTGAGAGAACTGTTACTACATTCTAATGATAACCAACTGGACGCCAAAACTTTGGCTACCCTGTTTGGTACCCTGTTTTTAAGAGCGCCAAAAAGCAAGGAGGCGGGGCTTAGCAAGAAAACTGTCAATCAACTGACGCAGAAGAAAGCGCGATTCATGTACCATTTCCTAGTCAACGAATTTGGTCCTGACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D3ZGS3	Inositol polyphosphate 5-phosphatase OCRL OS=Rattus norvegicus OX=10116 GN=Ocrl PE=1 SV=1
Q01968	Inositol polyphosphate 5-phosphatase OCRL OS=Homo sapiens OX=9606 GN=OCRL PE=1 SV=3
Q6NVF0	Inositol polyphosphate 5-phosphatase OCRL OS=Mus musculus OX=10090 GN=Ocrl PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003710 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF21310 all species →	OCRL-like_ASH	Inositol polyphosphate 5-phosphatase OCRL-like, ASH domain	Domain	Interproscan
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF16776 all species →	INPP5B_PH	Type II inositol 1,4,5-trisphosphate 5-phosphatase PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046985 all species →	Family	Inositol 5-phosphatase	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR047078 all species →	Domain	Inositol polyphosphate 5-phosphatase OCRL, RhoGAP	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR037793 all species →	Domain	OCRL1/INPP5B, INPP5c domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR048869 all species →	Domain	OCRL-1/2, ASH domain	Interproscan
IPR000300 all species →	Domain	Inositol polyphosphate-related phosphatase	Interproscan
IPR031896 all species →	Domain	INPP5B, PH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11200 all species →	INOSITOL 5-PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004439 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0052745 all species →	Molecular Function	inositol phosphate phosphatase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01099	INPP5B_F; inositol polyphosphate 5-phosphatase INPP5B/F	EC:3.1.3.36	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap6.3150 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples

0TPM > 0

4Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole organism · cold control	14	0	0.00	0.00
whole organism · heat control	12	0	0.00	0.00
whole organism · cold challenge	12	0	0.00	0.00
whole organism · heat challenge	11	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR10674714	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674715	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674724	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674733	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674734	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674735	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674736	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674737	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674739	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674743	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674746	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674747	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674748	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674750	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674706	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674707	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674708	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674717	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674718	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674720	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674721	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674725	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674731	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674741	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674752	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674753	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674711	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674712	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674713	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674722	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674723	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674730	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674732	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674738	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674740	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674744	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674745	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674749	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674709	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674710	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674716	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674719	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674726	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674727	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674728	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674729	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674742	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674751	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674754	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.