Gene detail

Detailed information of evm.model.Ap6.3152 in Astrangia poculata

Genomic Location: Ap6:32617676...32634309
NR annotation: KAJ7363409.1, Minichromosome maintenance domain-containing protein 2 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.3152

atggagacaaagagtatctcagaagtagcattcgaatggctgtgtgaatgtggagcttttgaccagctcaaaaagcaatgtgaatgctatacagcagattttgcggaaaagactgtttacagatttgttcttgaaatggacctgatgcatttgctagattttaatgctacacttggaaatctggtaataactgagcctttgaatgccatcaatgtgtttcaagaggtctgctatgttatcattcataccctgtcctggataccagatttgttgttcccatcacaagtgcttgctgttgtcaggttttcttcagtttcaccacatcaagaatgtgtaagcagcaagaaccttgctggaaatggtcaacctaatcttgtaaagattgttggtattgtaacaggaatcacagctgtcacccagtacacccagagtgcaagattttattgtcctctatctgactgctttggttcctctaaatattgttatatcagagttcatttggctggaaaaactgagaatgtaactgtaagaagtgattttgtgtgcagatattgtggatgctctcttattgaagatgtaacttgccgtactttagcagataagtgcattgttcaagtaatatctccctcgacagtagacaagaagctatggatcaactcagatgatggacaattctaccaagctatcccaatctatgtccgagatgaacttatcaaggaagttcagattggctgctacttttcatttgttgttttaccttcctgtgaaattcaggaaacttctgtacactttcagtgtactccagtctttgaggcaaataacatagagaagattaatcctagtccattcctcagtctaatgccatccaatttgccagaaagaatagagatgctatataaagacagagaggactcaccttggagttttgttgccagtctagcttactgctttggagactctgtgacacctcttggtacattctttcaactgaagatgttcatgctgatgtgcctgctgctgcttcactcccctgaggatgctaaacaagctcactccaaaaatcttcacttgcttgttattgctgatgatcttctcaggattcaacggcttttgttgtatggagcgtcgtttgcaaagagaatgcttgtttactcacccatcagtgatttgtttccatctttttgtcgcgatccttttggctctgacacttgtatggttaatgctggatgtgtttctttggcaactgatggtatctgtgttattccaaatgcagctcctctaaaaaaggatcaaaaggacaaacttcaaaatgctttagagaatgaatccataacggttaaggtaccagagaagtattgggcctgccaaggtcaccagctgtccgtgccactatgctgcagtgtttgggcgtgttctgaaccagcacagaaaactggacaccaagcagtgtttgatcctatgttaaacccaggtcacacaattaaggactgttccactttgccaagagcctttgtagaccagttttcgctagtgattaacttgagtggatcggtcgaacatgttgacaactctgatgagtccgtgagtgaggaggtgttaaggaaagcgatggagtacccagtagacggagcattgttatacatcagtgacgaggaaatgagccagttccttcactattctgcacgtcgacatgtttgcctgacagcggcagcacaagatcttattcaaggttattacctagcaagcaggcgaaccagaaactctcattcaacaggaggctcagactttgcagcttctgcactacaaactctgaccagcctggctatcgctcatgccaagctagcactcagatcagaggtatcggaagaagatgctgttgtagctatcgtactatacgaggactctgtcaaatggaaatacggctattcggggcttggtcctgtagaacccccatcgcctggtgaagatgcctctgaattttttggtccaaagttttacctgccactatacctgtag

Transcript

evm.model.Ap6.3152

ATGGAGACAAAGAGTATCTCAGAAGTAGCATTCGAATGGCTGTGTGAATGTGGAGCTTTTGACCAGCTCAAAAAGCAATGTGAATGCTATACAGCAGATTTTGCGGAAAAGACTGTTTACAGATTTGTTCTTGAAATGGACCTGATGCATTTGCTAGATTTTAATGCTACACTTGGAAATCTGGTAATAACTGAGCCTTTGAATGCCATCAATGTGTTTCAAGAGGTCTGCTATGTTATCATTCATACCCTGTCCTGGATACCAGATTTGTTGTTCCCATCACAAGTGCTTGCTGTTGTCAGGTTTTCTTCAGTTTCACCACATCAAGAATGTGTAAGCAGCAAGAACCTTGCTGGAAATGGTCAACCTAATCTTGTAAAGATTGTTGGTATTGTAACAGGAATCACAGCTGTCACCCAGTACACCCAGAGTGCAAGATTTTATTGTCCTCTATCTGACTGCTTTGGTTCCTCTAAATATTGTTATATCAGAGTTCATTTGGCTGGAAAAACTGAGAATGTAACTGTAAGAAGTGATTTTGTGTGCAGATATTGTGGATGCTCTCTTATTGAAGATGTAACTTGCCGTACTTTAGCAGATAAGTGCATTGTTCAAGTAATATCTCCCTCGACAGTAGACAAGAAGCTATGGATCAACTCAGATGATGGACAATTCTACCAAGCTATCCCAATCTATGTCCGAGATGAACTTATCAAGGAAGTTCAGATTGGCTGCTACTTTTCATTTGTTGTTTTACCTTCCTGTGAAATTCAGGAAACTTCTGTACACTTTCAGTGTACTCCAGTCTTTGAGGCAAATAACATAGAGAAGATTAATCCTAGTCCATTCCTCAGTCTAATGCCATCCAATTTGCCAGAAAGAATAGAGATGCTATATAAAGACAGAGAGGACTCACCTTGGAGTTTTGTTGCCAGTCTAGCTTACTGCTTTGGAGACTCTGTGACACCTCTTGGTACATTCTTTCAACTGAAGATGTTCATGCTGATGTGCCTGCTGCTGCTTCACTCCCCTGAGGATGCTAAACAAGCTCACTCCAAAAATCTTCACTTGCTTGTTATTGCTGATGATCTTCTCAGGATTCAACGGCTTTTGTTGTATGGAGCGTCGTTTGCAAAGAGAATGCTTGTTTACTCACCCATCAGTGATTTGTTTCCATCTTTTTGTCGCGATCCTTTTGGCTCTGACACTTGTATGGTTAATGCTGGATGTGTTTCTTTGGCAACTGATGGTATCTGTGTTATTCCAAATGCAGCTCCTCTAAAAAAGGATCAAAAGGACAAACTTCAAAATGCTTTAGAGAATGAATCCATAACGGTTAAGGTACCAGAGAAGTATTGGGCCTGCCAAGGTCACCAGCTGTCCGTGCCACTATGCTGCAGTGTTTGGGCGTGTTCTGAACCAGCACAGAAAACTGGACACCAAGCAGTGTTTGATCCTATGTTAAACCCAGGTCACACAATTAAGGACTGTTCCACTTTGCCAAGAGCCTTTGTAGACCAGTTTTCGCTAGTGATTAACTTGAGTGGATCGGTCGAACATGTTGACAACTCTGATGAGTCCGTGAGTGAGGAGGTGTTAAGGAAAGCGATGGAGTACCCAGTAGACGGAGCATTGTTATACATCAGTGACGAGGAAATGAGCCAGTTCCTTCACTATTCTGCACGTCGACATGTTTGCCTGACAGCGGCAGCACAAGATCTTATTCAAGGTTATTACCTAGCAAGCAGGCGAACCAGAAACTCTCATTCAACAGGAGGCTCAGACTTTGCAGCTTCTGCACTACAAACTCTGACCAGCCTGGCTATCGCTCATGCCAAGCTAGCACTCAGATCAGAGGTATCGGAAGAAGATGCTGTTGTAGCTATCGTACTATACGAGGACTCTGTCAAATGGAAATACGGCTATTCGGGGCTTGGTCCTGTAGAACCCCCATCGCCTGGTGAAGATGCCTCTGAATTTTTTGGTCCAAAGTTTTACCTGCCACTATACCTGTAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004345 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17855 all species →	MCM_lid	MCM AAA-lid domain	Domain	Interproscan
PF00493 all species →	MCM	MCM P-loop domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031327 all species →	Family	Mini-chromosome maintenance protein	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041562 all species →	Domain	MCM, AAA-lid domain	Interproscan
IPR001208 all species →	Domain	MCM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11630 all species →	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000727 all species →	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0017116 all species →	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07869	RHOBTB3; Rho-related BTB domain-containing protein 3	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.