Gene detail

Detailed information of evm.model.Ap6.3154 in Astrangia poculata

Genomic Location: Ap6:32655915...32659581
NR annotation: XP_027060564.1, neuroglobin-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3C1F4	Anaerobic nitrite reductase Glb1-1 OS=Lotus japonicus OX=34305 GN=GLB1-1 PE=1 SV=1
O24520	Anaerobic nitrite reductase AHB1 OS=Arabidopsis thaliana OX=3702 GN=AHB1 PE=1 SV=1
I3SPW2	Anaerobic nitrite reductase Glb1-1 OS=Medicago truncatula OX=3880 GN=Glb1-1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000448 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00042 all species →	Globin	Globin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000971 all species →	Domain	Globin	Interproscan
IPR044399 all species →	Domain	Myoglobin-like, M family globin domain	Interproscan
IPR012292 all species →	Homologous_superfamily	Globin/Protoglobin	Interproscan
IPR009050 all species →	Homologous_superfamily	Globin-like superfamily	Interproscan
IPR050532 all species →	Family	Globin-like Oxygen Transporters	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46458 all species →	BLR2807 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0019825 all species →	Molecular Function	oxygen binding	Interproscan
GO:0001666 all species →	Biological Process	response to hypoxia	Interproscan
GO:0005344 all species →	Molecular Function	oxygen carrier activity	Interproscan
GO:0015671 all species →	Biological Process	oxygen transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21893	NGB; neuroglobin	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.