Detailed information of evm.model.Ap6.3264 in Astrangia poculata

Genomic Location: Ap6:33761318...33762132
NR annotation: XP_027047772.1, chloride intracellular channel protein 1-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BHB9Chloride intracellular channel protein 6 OS=Mus musculus OX=10090 GN=Clic6 PE=1 SV=1
Q9N2G5Chloride intracellular channel protein 6 OS=Oryctolagus cuniculus OX=9986 GN=CLIC6 PE=1 SV=1
Q811Q2Chloride intracellular channel protein 6 OS=Rattus norvegicus OX=10116 GN=Clic6 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001610 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for evm.model.Ap6.3264 in Astrangia poculata.
 InterPro
InterPro termTypeDescriptionSource
IPR036282
all species →		Homologous_superfamilyGlutathione S-transferase, C-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43920
all species →		CHLORIDE INTRACELLULAR CHANNEL, ISOFORM AInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005254
all species →		Molecular Functionchloride channel activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006821
all species →		Biological Processchloride transportInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap6.3264.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap6.3264 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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