Genomic Location: Ap6:2998137...3014479
NR annotation: XP_029201074.1, cleavage stimulation factor subunit 1-like isoform X2 [Acropora millepora]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap6.336 |
| Transcript |
| evm.model.Ap6.336 |
| Protein |
| evm.model.Ap6.336 |
| UniProt accession | Description |
|---|---|
| Q05048 | Cleavage stimulation factor subunit 1 OS=Homo sapiens OX=9606 GN=CSTF1 PE=1 SV=1 |
| Q5R8K2 | Cleavage stimulation factor subunit 1 OS=Pongo abelii OX=9601 GN=CSTF1 PE=2 SV=1 |
| Q99LC2 | Cleavage stimulation factor subunit 1 OS=Mus musculus OX=10090 GN=Cstf1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002738 (this species only) |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16699 all species → | CSTF1_dimer | Cleavage stimulation factor subunit 1, dimerisation domain | Domain | Interproscan |
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR032028 all species → | Domain | Cleavage stimulation factor subunit 1, dimerisation domain | Interproscan |
| IPR038184 all species → | Homologous_superfamily | CSTF1, dimerization domain superfamily | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR044633 all species → | Family | Cleavage stimulation factor subunit 1-like | Interproscan |
| IPR019775 all species → | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR44133 all species → | CLEAVAGE STIMULATION FACTOR SUBUNIT 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0005848 all species → | Cellular Component | mRNA cleavage stimulating factor complex | Interproscan |
| GO:0031124 all species → | Biological Process | mRNA 3'-end processing | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14406 | CSTF1; cleavage stimulation factor subunit 1 | - | Messenger RNA biogenesis | ko03019 | deepkoala |
Transcript abundance of evm.model.Ap6.336 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
