Gene detail

Detailed information of evm.model.Ap6.356 in Astrangia poculata

Genomic Location: Ap6:3202927...3217575
NR annotation: KAJ7393334.1, Calmodulin-binding transcription activator 1 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.356

atgacagccgagcacgactctagacaacagtctaacgcctctgaaatcgctcttcccgacaaattagcgaaaatcaagaaagctgatgacttcgcggccgtgaaatacaaatggaacagtaatgaggaggttctgtctttgttgacaagtcttagcaaccatgaaacctgggtgacaagagcagttccagacaggcctgaaaatggatccatgtttctctttgatcgaagcaaggtcaagaattatcgcaaggatggctacacgtggaagaagagaagatcaggaaatacaattagagaagatcatactagactgaaggttgatggagttgagtgtttaagtgtactgtacactcattctgctctggtgccaacatttcatcgtcgctgttactggatgctgcagaatcctcagatagtattggttcattatttgaatttggtggaagaatgcaacaagcccatcaccgtatctgtgtacacatctcctgacagccgcgatgacatttcacaacaactggaagccatctatgcgggtgtttctcaagatgtcaagcctgaagttacggtatcagaggaaagtccccccggatcgccatcatcctctgaagaaggcgagagttcatcgtctaaaggcaaacgaaacagtaaaagaaacaaagcagtctataaaatctcaatttcaccaaataaaagcttccaagccaaagctcgcgcgggaaaactgagcatcaaagtcatcaaggtgacgaaaaatgaccaaggacgtttgactgtgacaggacatagagaaggctcgccttcattagaagaagataattcctcgcacgaagggaatgactctggcacagtggacgatcccggcctgagcacgtgccagccgacagtcactacacgtgatggccatgtgttcgtcaccagtccgcaaaactttacacaacacccgcctccaagagacatttctatactttctgttgttcccatggtaacgcatccgtccatatccgctttatcgtatcaggtacagaactcgctcggaaacaacgagtgcagtgctacgaatgtcacaccgacatcaaattcacattttcttccagaaaatcatctatcgaatgccatttcggtcaatcaactctctagagaggcaaaccaaaatgctggaatccagtggaattcggtttttattaaccctcgcgttgcggagttgggaagcagcccctccagcgactatgggagttatatgtctgatggaggcactcgacatagtttctcagggtcagattccatgagtggcggctttcccgctcaaaatattccagactcggaccgtggagtgtttgacggcccatttcgtgtcccgctccccgtggatagagactttcagcaaaactttgctgattcagcgaaaagtgacaatagcttggctcaccatggccaagaagcgtggtcgctgaccgattgtagcacgggaacgtcacaatctagcggcaatgatattcccgttgatatgacggatttagcgcattttgattcgctcgagtttgatgacatgttcgattgtgatctgagtcacgtcattccagaatgcttcaccgattgcttgacttcatcacctaaacatactgacaacggtttgataacaactagtgggaacatggactctagctatgtcacaaccacttgcactactccgcaaccctcaattcctctctgtcctttcacttccggtagccaagaacagtgtgccggatttccccaagagacaacttccggtttgtcgtcgactacgtcttatgtatttgttaagcccgtcagcccagtgagaagcacggtagtgacgtcatgttttgtcaacgtcagtaagaatacgcttgcgtcatcttccgggacatctgtcagcgaggctagtacccagacttcagacggcaacaggcgagtttgcggcgaagtgaacatgacagatgtgtcctgctctcaaacagttgcgcaggcaaccccaactcaagtttgtctcattgccccatcgcaggcgcagggtttccaacagcaagccaaagcatcgttgcctaacgacgtaaacaacaattctttgcgcacactttctgcagggaaaaccgctgacgcttattcctcacatccaggaaaccacgtcgttccagtctccgcgcgcatcaccgacttctcccctgaatggtcttatcctgagggaggagctaaagtgctcatcactggcgagtggagaatggagcaaggctcatacacgtgtttgttcgatggttgtagcgtacctgcgatcttgtaccaatctggcgttttgcgatgtttttgtcctccgcacgatccaggcttggttaccctgcaagtcgcgtgcaatgggtttatcgtcagcaacgcatgcgtgtttgagtatcgtgcacgtgattcacccgtggcgggcgctagctgtcacgagtggctcgccactgataatgatcggtttaaactggctatacttgatcgcctggagagattagagtccaggctcaattcggaccaaacgaacagttccgtaaaccacacccaggggaagcagtgcatgacgtttgaagatcggctgatcgttgcttgtgaaatcttccaacgagcttcaagctccgtcagaaacgccacaaaaggcgacaaagcattccgaggaatgactcttctgcatctctccgcggcactgggtttcaagagactcgtttgcacgcttttgaaattttggcgcgaaagtgacagctctcttgtcagagaggagatgaacccgctcagaaaggacgagtttgcctgcacgccgctgacctgggcatgtgcactaggtcagacagacactgctttggtgttgctagagactgaacccaaggcgttgttggagcctgatgcacgaggccgtatgcccttacagctggccagagataggggctttctggacgtggtcgatgttattgaagatttcgtcatgtcttctccgtacagtcgtttaattatcggagtggaccatgaatgtgatgacgttccatctccgatggcctcatcatgcgaggactctcctcaacctctatccacggcccctcattcttgccccttaccagcctctgtggatgcgaacatggctgagcgagcaaattcgccgatgtttgtggacgatgacgaggaagaagagcctcagatgaacagaaagccagctaatactctagcgaaaaccttggtgcagattcattccatgataaacgaggctgaacaggaagcggaactaaatcaccgtttatctgggcatttatccccgctacacgagaattccgaactcgttacatccgggtcttggggcgcggcaatgaggctgcgcaccttcagctcggcctcgtcccagtcctcccctctcacgccgtgctcgtccaagtcttcactctctccaggttctcccggcttccttaactcgccccattcctctccagctggaccagacacgacggaattccaggagttcatttccagctctcgtaagctgttggaaagagatttccatgatctcacgttaacagatcgcgagcagtgggaactctatgaagcagccaagatcatccagaacgcttacagaaattacaagacaagacgtcaccagcaggaacaggaaatagaagccgccatcttgatccaacatcagtatcggagatacaaagagtacattgcattcaagaagatgacacgtgcagcattgatcatccagagccagtatcgtacataccgtgaacacgagagattcaagaaaagcaggcgagcggcagccattattcagaatagctttagaagttacagagagagacggcgcacgtcacaaagacggcgagaagatcgtctcagcaagagacaggaggctcgatacatgaaaaaagcctccaatagatccaaggacaacacataa

Transcript

evm.model.Ap6.356

ATGACAGCCGAGCACGACTCTAGACAACAGTCTAACGCCTCTGAAATCGCTCTTCCCGACAAATTAGCGAAAATCAAGAAAGCTGATGACTTCGCGGCCGTGAAATACAAATGGAACAGTAATGAGGAGGTTCTGTCTTTGTTGACAAGTCTTAGCAACCATGAAACCTGGGTGACAAGAGCAGTTCCAGACAGGCCTGAAAATGGATCCATGTTTCTCTTTGATCGAAGCAAGGTCAAGAATTATCGCAAGGATGGCTACACGTGGAAGAAGAGAAGATCAGGAAATACAATTAGAGAAGATCATACTAGACTGAAGGTTGATGGAGTTGAGTGTTTAAGTGTACTGTACACTCATTCTGCTCTGGTGCCAACATTTCATCGTCGCTGTTACTGGATGCTGCAGAATCCTCAGATAGTATTGGTTCATTATTTGAATTTGGTGGAAGAATGCAACAAGCCCATCACCGTATCTGTGTACACATCTCCTGACAGCCGCGATGACATTTCACAACAACTGGAAGCCATCTATGCGGGTGTTTCTCAAGATGTCAAGCCTGAAGTTACGGTATCAGAGGAAAGTCCCCCCGGATCGCCATCATCCTCTGAAGAAGGCGAGAGTTCATCGTCTAAAGGCAAACGAAACAGTAAAAGAAACAAAGCAGTCTATAAAATCTCAATTTCACCAAATAAAAGCTTCCAAGCCAAAGCTCGCGCGGGAAAACTGAGCATCAAAGTCATCAAGGTGACGAAAAATGACCAAGGACGTTTGACTGTGACAGGACATAGAGAAGGCTCGCCTTCATTAGAAGAAGATAATTCCTCGCACGAAGGGAATGACTCTGGCACAGTGGACGATCCCGGCCTGAGCACGTGCCAGCCGACAGTCACTACACGTGATGGCCATGTGTTCGTCACCAGTCCGCAAAACTTTACACAACACCCGCCTCCAAGAGACATTTCTATACTTTCTGTTGTTCCCATGGTAACGCATCCGTCCATATCCGCTTTATCGTATCAGGTACAGAACTCGCTCGGAAACAACGAGTGCAGTGCTACGAATGTCACACCGACATCAAATTCACATTTTCTTCCAGAAAATCATCTATCGAATGCCATTTCGGTCAATCAACTCTCTAGAGAGGCAAACCAAAATGCTGGAATCCAGTGGAATTCGGTTTTTATTAACCCTCGCGTTGCGGAGTTGGGAAGCAGCCCCTCCAGCGACTATGGGAGTTATATGTCTGATGGAGGCACTCGACATAGTTTCTCAGGGTCAGATTCCATGAGTGGCGGCTTTCCCGCTCAAAATATTCCAGACTCGGACCGTGGAGTGTTTGACGGCCCATTTCGTGTCCCGCTCCCCGTGGATAGAGACTTTCAGCAAAACTTTGCTGATTCAGCGAAAAGTGACAATAGCTTGGCTCACCATGGCCAAGAAGCGTGGTCGCTGACCGATTGTAGCACGGGAACGTCACAATCTAGCGGCAATGATATTCCCGTTGATATGACGGATTTAGCGCATTTTGATTCGCTCGAGTTTGATGACATGTTCGATTGTGATCTGAGTCACGTCATTCCAGAATGCTTCACCGATTGCTTGACTTCATCACCTAAACATACTGACAACGGTTTGATAACAACTAGTGGGAACATGGACTCTAGCTATGTCACAACCACTTGCACTACTCCGCAACCCTCAATTCCTCTCTGTCCTTTCACTTCCGGTAGCCAAGAACAGTGTGCCGGATTTCCCCAAGAGACAACTTCCGGTTTGTCGTCGACTACGTCTTATGTATTTGTTAAGCCCGTCAGCCCAGTGAGAAGCACGGTAGTGACGTCATGTTTTGTCAACGTCAGTAAGAATACGCTTGCGTCATCTTCCGGGACATCTGTCAGCGAGGCTAGTACCCAGACTTCAGACGGCAACAGGCGAGTTTGCGGCGAAGTGAACATGACAGATGTGTCCTGCTCTCAAACAGTTGCGCAGGCAACCCCAACTCAAGTTTGTCTCATTGCCCCATCGCAGGCGCAGGGTTTCCAACAGCAAGCCAAAGCATCGTTGCCTAACGACGTAAACAACAATTCTTTGCGCACACTTTCTGCAGGGAAAACCGCTGACGCTTATTCCTCACATCCAGGAAACCACGTCGTTCCAGTCTCCGCGCGCATCACCGACTTCTCCCCTGAATGGTCTTATCCTGAGGGAGGAGCTAAAGTGCTCATCACTGGCGAGTGGAGAATGGAGCAAGGCTCATACACGTGTTTGTTCGATGGTTGTAGCGTACCTGCGATCTTGTACCAATCTGGCGTTTTGCGATGTTTTTGTCCTCCGCACGATCCAGGCTTGGTTACCCTGCAAGTCGCGTGCAATGGGTTTATCGTCAGCAACGCATGCGTGTTTGAGTATCGTGCACGTGATTCACCCGTGGCGGGCGCTAGCTGTCACGAGTGGCTCGCCACTGATAATGATCGGTTTAAACTGGCTATACTTGATCGCCTGGAGAGATTAGAGTCCAGGCTCAATTCGGACCAAACGAACAGTTCCGTAAACCACACCCAGGGGAAGCAGTGCATGACGTTTGAAGATCGGCTGATCGTTGCTTGTGAAATCTTCCAACGAGCTTCAAGCTCCGTCAGAAACGCCACAAAAGGCGACAAAGCATTCCGAGGAATGACTCTTCTGCATCTCTCCGCGGCACTGGGTTTCAAGAGACTCGTTTGCACGCTTTTGAAATTTTGGCGCGAAAGTGACAGCTCTCTTGTCAGAGAGGAGATGAACCCGCTCAGAAAGGACGAGTTTGCCTGCACGCCGCTGACCTGGGCATGTGCACTAGGTCAGACAGACACTGCTTTGGTGTTGCTAGAGACTGAACCCAAGGCGTTGTTGGAGCCTGATGCACGAGGCCGTATGCCCTTACAGCTGGCCAGAGATAGGGGCTTTCTGGACGTGGTCGATGTTATTGAAGATTTCGTCATGTCTTCTCCGTACAGTCGTTTAATTATCGGAGTGGACCATGAATGTGATGACGTTCCATCTCCGATGGCCTCATCATGCGAGGACTCTCCTCAACCTCTATCCACGGCCCCTCATTCTTGCCCCTTACCAGCCTCTGTGGATGCGAACATGGCTGAGCGAGCAAATTCGCCGATGTTTGTGGACGATGACGAGGAAGAAGAGCCTCAGATGAACAGAAAGCCAGCTAATACTCTAGCGAAAACCTTGGTGCAGATTCATTCCATGATAAACGAGGCTGAACAGGAAGCGGAACTAAATCACCGTTTATCTGGGCATTTATCCCCGCTACACGAGAATTCCGAACTCGTTACATCCGGGTCTTGGGGCGCGGCAATGAGGCTGCGCACCTTCAGCTCGGCCTCGTCCCAGTCCTCCCCTCTCACGCCGTGCTCGTCCAAGTCTTCACTCTCTCCAGGTTCTCCCGGCTTCCTTAACTCGCCCCATTCCTCTCCAGCTGGACCAGACACGACGGAATTCCAGGAGTTCATTTCCAGCTCTCGTAAGCTGTTGGAAAGAGATTTCCATGATCTCACGTTAACAGATCGCGAGCAGTGGGAACTCTATGAAGCAGCCAAGATCATCCAGAACGCTTACAGAAATTACAAGACAAGACGTCACCAGCAGGAACAGGAAATAGAAGCCGCCATCTTGATCCAACATCAGTATCGGAGATACAAAGAGTACATTGCATTCAAGAAGATGACACGTGCAGCATTGATCATCCAGAGCCAGTATCGTACATACCGTGAACACGAGAGATTCAAGAAAAGCAGGCGAGCGGCAGCCATTATTCAGAATAGCTTTAGAAGTTACAGAGAGAGACGGCGCACGTCACAAAGACGGCGAGAAGATCGTCTCAGCAAGAGACAGGAGGCTCGATACATGAAAAAAGCCTCCAATAGATCCAAGGACAACACATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y6Y1	Calmodulin-binding transcription activator 1 OS=Homo sapiens OX=9606 GN=CAMTA1 PE=1 SV=4
A2A891	Calmodulin-binding transcription activator 1 OS=Mus musculus OX=10090 GN=Camta1 PE=2 SV=1
O94983	Calmodulin-binding transcription activator 2 OS=Homo sapiens OX=9606 GN=CAMTA2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005260 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00612 all species →	IQ	IQ calmodulin-binding motif	Motif	Interproscan
PF03859 all species →	CG-1	CG-1 domain	Domain	Interproscan
PF01833 all species →	TIG	IPT/TIG domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005559 all species →	Domain	CG-1 DNA-binding domain	Interproscan
IPR000048 all species →	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR002909 all species →	Domain	IPT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23335 all species →	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21596	CAMTA; calmodulin-binding transcription activator	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.