Gene detail

Detailed information of evm.model.Ap6.379 in Astrangia poculata

Genomic Location: Ap6:3406887...3429257
NR annotation: CAH3016232.1, unnamed protein product [Porites evermanni]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.379

atgttgagagctgtgggcgctttcagccaacactgtgaacagtgtttaaaaagaaatgccacagaacaagctggaagatttctctccagacatgcaacacttcatcaattaccacaatccaatgttagccatcaaaaacattatattcacactttattaattctacgacagagaaatattagaacgtttgccaggactccacatggaatgttccctgacgtgacaagaactctcatcaacaggagtataaagggtgaacgaatgttcacaactggggttattagggctgtgatgcgagtggctagagtgaggtatattctacttgggactgctggcgcaggaggcattgcagctaaaatgacgtatgattcatggaaggataagtggttgagatttcaggaaagtttacctgaatttggctggttgaaggaactgagggatagcttgcctgatttctccaacacttttgcaggaggctcagaagtcacacgcagccttgttgacagtttaaaagattttgtggatgaaattttgtggtcttcagaagtcagccctcctgtggtgtctgctgccatcaaacaagaaagtggagaaaagtcatcagctcccaagaaatcagccatggaaaagatgcaagaaagattggagaaatctcaagaagaactgattgagatgcagcaacgataccaacgagagatagacaagcttgaacgagacaaccgagagttacggaagcaagtaatcattctaaagggtgacagtatgccagccccaagaaggattaagaaatctttgattgacatgtattctgatgttctggaccttctgtcagagtatgatgtgagttacaacaccactgaccatttaccgagggttgtagttgttggtgatcagagtgctggtaagacaagtgtattggagatgattgcacaagccaggatttttccaaggggttctggacagatgatgacaagagccccagttatggtgaccttgagtgaagggccaaaccacatggcccagttcaagggaagcagtcatcaatatgacctgacacaggaagatgagcttaaagggctgaggcaggagattgaaattcgaatgaagaacagtgtcaaacatggacaaacagtcagccctgaggtgatatctctcagtgtcaaaggcccaggactacatcgcatggtgttggttgaccttccaggaattattgggacgatcacagctggtatggcagaaaacacaaaagatgatattgttggaatgagcagaaagtacatgcaaaatccaaatgcaatcatcttgtgtattcaagatggctccattgatgccgagagaagcaatgttactgatttggtgagcagcatggatcctgcaggaaagaggactatttttgtgctgactaaagttgacttagcagaacaaaatgatgcaaatccaagccggatcaagcaaatactggaaggcaaactgttccctatgaaggctctggggtattttgctgtagtgactggaacaggtaacaccagtgagggcattgataccatccgtagctatgaagaagaattctttagacactcgagactttttaagtccggagtattcaaagctagtcagatgacaacacagaacctcagtttcgccgtgtcacactgcttttggaaaatggttcgagaatcaattgagcagcaagcagactcctacaaagccaaacggttcaatcttgaaacggaatggaaaaacttttttccaaagctcagagagttggacaggaatgaactctttgacaaggctcgcaatgaaattctggatgaagtgttgacactgagcgagatcacgcctcagatgtgggaagacatcatcactaaacacctctggtcagcggtagccccgcacttcatagaaacgatttatcttcccgctgcacaagctgataacccgagcaactttaacacatctgttgacattaaactcaaacaatgggcggaaagatctctgcctgatatttctgttaaggttggttggcaaacactttttgaagaattctccaaagcgatgcaggagcagaagaacgaaaaagatggccacagccatttgtttgaagaactcaaatctgaactgtcagatgagtgtaaacgaagtcacgtgtggcaatcaaaagccattgacagcctgcgtgtgattcaactgactgcacttgaagactggtccgttagcgagaaacaacagtgggactctgccgtgaaattcatggagactactttacaagatgaattagacaaagcctccaagaaaatgtacgagttgcttggtcccggtgcaactgagagatggttttactggagatccagaagtagagaacaacaacttcggtcctacatcaaagacgaacttcagagattacttcaagcaaacgagcgtcacgggccgatactcgcagacgacgagctgaccaccgttagaaaaaatctagaaaccattagtgtggacgtatctactgatctggtaaatgagacatggagtcagttgtaccgagaacattttctgaagcaatccttgggaaacgttcaggaatgcagaagtgctttttatagaagagatttggtcaaaaatgagcttggttgtaatgatgtggtgctcttctggcgaattcagaagatgcttcaaacaacgagtaacgccatcagacagcaagtcatgaatcatgaagctcgccgactcgaaaaagaagtgaaacaagttctggatgaaattagctacgaccagacatccaaagagagacttattcgcggacgacaagttgaccttgccgaagaattaaaacatgtgagacatatacaagaaagtttggaacaattcatcgaagctttgaacagtgaaaagtag

Transcript

evm.model.Ap6.379

ATGTTGAGAGCTGTGGGCGCTTTCAGCCAACACTGTGAACAGTGTTTAAAAAGAAATGCCACAGAACAAGCTGGAAGATTTCTCTCCAGACATGCAACACTTCATCAATTACCACAATCCAATGTTAGCCATCAAAAACATTATATTCACACTTTATTAATTCTACGACAGAGAAATATTAGAACGTTTGCCAGGACTCCACATGGAATGTTCCCTGACGTGACAAGAACTCTCATCAACAGGAGTATAAAGGGTGAACGAATGTTCACAACTGGGGTTATTAGGGCTGTGATGCGAGTGGCTAGAGTGAGGTATATTCTACTTGGGACTGCTGGCGCAGGAGGCATTGCAGCTAAAATGACGTATGATTCATGGAAGGATAAGTGGTTGAGATTTCAGGAAAGTTTACCTGAATTTGGCTGGTTGAAGGAACTGAGGGATAGCTTGCCTGATTTCTCCAACACTTTTGCAGGAGGCTCAGAAGTCACACGCAGCCTTGTTGACAGTTTAAAAGATTTTGTGGATGAAATTTTGTGGTCTTCAGAAGTCAGCCCTCCTGTGGTGTCTGCTGCCATCAAACAAGAAAGTGGAGAAAAGTCATCAGCTCCCAAGAAATCAGCCATGGAAAAGATGCAAGAAAGATTGGAGAAATCTCAAGAAGAACTGATTGAGATGCAGCAACGATACCAACGAGAGATAGACAAGCTTGAACGAGACAACCGAGAGTTACGGAAGCAAGTAATCATTCTAAAGGGTGACAGTATGCCAGCCCCAAGAAGGATTAAGAAATCTTTGATTGACATGTATTCTGATGTTCTGGACCTTCTGTCAGAGTATGATGTGAGTTACAACACCACTGACCATTTACCGAGGGTTGTAGTTGTTGGTGATCAGAGTGCTGGTAAGACAAGTGTATTGGAGATGATTGCACAAGCCAGGATTTTTCCAAGGGGTTCTGGACAGATGATGACAAGAGCCCCAGTTATGGTGACCTTGAGTGAAGGGCCAAACCACATGGCCCAGTTCAAGGGAAGCAGTCATCAATATGACCTGACACAGGAAGATGAGCTTAAAGGGCTGAGGCAGGAGATTGAAATTCGAATGAAGAACAGTGTCAAACATGGACAAACAGTCAGCCCTGAGGTGATATCTCTCAGTGTCAAAGGCCCAGGACTACATCGCATGGTGTTGGTTGACCTTCCAGGAATTATTGGGACGATCACAGCTGGTATGGCAGAAAACACAAAAGATGATATTGTTGGAATGAGCAGAAAGTACATGCAAAATCCAAATGCAATCATCTTGTGTATTCAAGATGGCTCCATTGATGCCGAGAGAAGCAATGTTACTGATTTGGTGAGCAGCATGGATCCTGCAGGAAAGAGGACTATTTTTGTGCTGACTAAAGTTGACTTAGCAGAACAAAATGATGCAAATCCAAGCCGGATCAAGCAAATACTGGAAGGCAAACTGTTCCCTATGAAGGCTCTGGGGTATTTTGCTGTAGTGACTGGAACAGGTAACACCAGTGAGGGCATTGATACCATCCGTAGCTATGAAGAAGAATTCTTTAGACACTCGAGACTTTTTAAGTCCGGAGTATTCAAAGCTAGTCAGATGACAACACAGAACCTCAGTTTCGCCGTGTCACACTGCTTTTGGAAAATGGTTCGAGAATCAATTGAGCAGCAAGCAGACTCCTACAAAGCCAAACGGTTCAATCTTGAAACGGAATGGAAAAACTTTTTTCCAAAGCTCAGAGAGTTGGACAGGAATGAACTCTTTGACAAGGCTCGCAATGAAATTCTGGATGAAGTGTTGACACTGAGCGAGATCACGCCTCAGATGTGGGAAGACATCATCACTAAACACCTCTGGTCAGCGGTAGCCCCGCACTTCATAGAAACGATTTATCTTCCCGCTGCACAAGCTGATAACCCGAGCAACTTTAACACATCTGTTGACATTAAACTCAAACAATGGGCGGAAAGATCTCTGCCTGATATTTCTGTTAAGGTTGGTTGGCAAACACTTTTTGAAGAATTCTCCAAAGCGATGCAGGAGCAGAAGAACGAAAAAGATGGCCACAGCCATTTGTTTGAAGAACTCAAATCTGAACTGTCAGATGAGTGTAAACGAAGTCACGTGTGGCAATCAAAAGCCATTGACAGCCTGCGTGTGATTCAACTGACTGCACTTGAAGACTGGTCCGTTAGCGAGAAACAACAGTGGGACTCTGCCGTGAAATTCATGGAGACTACTTTACAAGATGAATTAGACAAAGCCTCCAAGAAAATGTACGAGTTGCTTGGTCCCGGTGCAACTGAGAGATGGTTTTACTGGAGATCCAGAAGTAGAGAACAACAACTTCGGTCCTACATCAAAGACGAACTTCAGAGATTACTTCAAGCAAACGAGCGTCACGGGCCGATACTCGCAGACGACGAGCTGACCACCGTTAGAAAAAATCTAGAAACCATTAGTGTGGACGTATCTACTGATCTGGTAAATGAGACATGGAGTCAGTTGTACCGAGAACATTTTCTGAAGCAATCCTTGGGAAACGTTCAGGAATGCAGAAGTGCTTTTTATAGAAGAGATTTGGTCAAAAATGAGCTTGGTTGTAATGATGTGGTGCTCTTCTGGCGAATTCAGAAGATGCTTCAAACAACGAGTAACGCCATCAGACAGCAAGTCATGAATCATGAAGCTCGCCGACTCGAAAAAGAAGTGAAACAAGTTCTGGATGAAATTAGCTACGACCAGACATCCAAAGAGAGACTTATTCGCGGACGACAAGTTGACCTTGCCGAAGAATTAAAACATGTGAGACATATACAAGAAAGTTTGGAACAATTCATCGAAGCTTTGAACAGTGAAAAGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F499	Dynamin-like GTPase OPA1, mitochondrial OS=Gallus gallus OX=9031 GN=OPA1 PE=2 SV=1
P58281	Dynamin-like GTPase OPA1, mitochondrial OS=Mus musculus OX=10090 GN=Opa1 PE=1 SV=1
Q2TA68	Dynamin-like GTPase OPA1, mitochondrial OS=Rattus norvegicus OX=10116 GN=Opa1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002989 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19434 all species →	OPA1_C	Dynamin-like GTPase OPA1 C-terminal	Domain	Interproscan
PF00350 all species →	Dynamin_N	Dynamin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001401 all species →	Domain	Dynamin, GTPase domain	Interproscan
IPR022812 all species →	Family	Dynamin	Interproscan
IPR030381 all species →	Domain	Dynamin-type guanine nucleotide-binding (G) domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045817 all species →	Domain	Dynamin-like GTPase OPA1, C-terminal	Interproscan
IPR045063 all species →	Domain	Dynamin, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11566 all species →	DYNAMIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0008053 all species →	Biological Process	mitochondrial fusion	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0031966 all species →	Cellular Component	mitochondrial membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17079	OPA1; optic atrophy protein 1	EC:3.6.5.5	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.