Gene detail

Detailed information of evm.model.Ap6.445 in Astrangia poculata

Genomic Location: Ap6:3994848...4005027
NR annotation: XP_020630489.1, segment polarity protein dishevelled homolog DVL-3-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.445

atggacgaaacgaaggttatataccacatagatgacgaagatacgccgtacctcgtaaagcttcctaaaagccctacagatgtaactctttctgatttcaaaaatgtcctcaatcggccgagctacaagtttttcttcaagagtatggacgatgacttcggtgtggtcaaagaagagataagcgatgaggagacgaatttaccgtgctttaatggaagagtcgttgcttggcttgtcacatcagacacaagcagtgtgtcggacactggtagggatgaccaacagtccgttatatctgctgcttctgatttgcatcctcccatgccaagaacagttggtattggggattcaagaccaccttccttccacccacacggaggacactctacagctggcgattttgattctgaagtagattccacagttagttccagaagagggtcgaggcggagagaaaaacatatcaacagaaatgaagtgatccatggtcggcaacgatcaggaggaagacatgaaggtgatagatatgagagtgcgtccatgatgagcagtgatattgaaacaacaagttatcaggattcttcagatgatcaaagcagtgtttcaaggttctccagcaccacagaaggatctcaacttcttagaggcagacataggaggcggagaaggcggcctaggatgcctagagttcaaagatgttcatcattcagtacaattacagaatcaaccatgtcactcaacatcattacagtcacactcaatatggaaaaagtgaattttctaggaattagtattgtcggtcaaagcaataaaagaggtgatggaggaatttatgttggttctatcatgaaagggggtgcagttgatttggatggtagaatagaacctggagatatgcttctacaggttaatgatgtcaattttgaaaatatgagcaatgatgatgctgtaagggtgttaagagaaatggttcataagccaggacccataactctgacagtggccaagtgctgggatccaactccaaaaggatatttcacattaccacctagtgaaccagttcgtccaattgatacctcagcatgggtacaacataccacacaaatgactcagtttggaccaacagctcaatatggaaaacagccaaacagtcagtcccttagcacagtaacatcgacaagctcttcaatgacaagttctctaccagaatcagacagatatactgaacttcaagaaggagaaggactctcagtaaacacagacatgaccacaatagttaaaacgatggccgctccagactctggtcttgatataagagacaggatgtggctcaaaatcactatccccaatgcatttataggatctgatgtagtagactggctttattcacatgtagaaggttttcaagacagacgtgaagcaagaaagtatgcctgcaatcttttaaaggctggttttattcgtcacactgtaaacaagatcacattctcagaacagtgctattatgtttttggagatctttgtggaaatatggccgccctttcaattaacgaacatgaaggtgatggtgataacgacactctgggacccctccctacacaccaacagggtatctcatggatgtcagggccaccaagttacggatatgttcaaatgcctacttacccacctccccaacccatggtggatacacagacaccaggatacgccccatcattttacagtgcacatagtggcagtcaaagcccccacagtgccagtggcagctccaaaaggagcggcggaggacgaggtgataacggtggagatggcgatcacaggagcagcggtggaagcagtagtgagaagagtggtagtagtaaaggcaaaagcaaaagcaaggaacttgaggctcgcagcgttgaaggatcagctcagccaccacagttcatgccaggggctccccctataggagttcctataggagttcctgtaggtgctccgatgcccgggggtccccctatgccaggaattgctatgatgccgaggcctcttgatcaagtacccgaaaacgtctcggcgagtaggaacagttttagaatggctatgggcaatccttgtgagttctttgtagatgtcatgtaa

Transcript

evm.model.Ap6.445

ATGGACGAAACGAAGGTTATATACCACATAGATGACGAAGATACGCCGTACCTCGTAAAGCTTCCTAAAAGCCCTACAGATGTAACTCTTTCTGATTTCAAAAATGTCCTCAATCGGCCGAGCTACAAGTTTTTCTTCAAGAGTATGGACGATGACTTCGGTGTGGTCAAAGAAGAGATAAGCGATGAGGAGACGAATTTACCGTGCTTTAATGGAAGAGTCGTTGCTTGGCTTGTCACATCAGACACAAGCAGTGTGTCGGACACTGGTAGGGATGACCAACAGTCCGTTATATCTGCTGCTTCTGATTTGCATCCTCCCATGCCAAGAACAGTTGGTATTGGGGATTCAAGACCACCTTCCTTCCACCCACACGGAGGACACTCTACAGCTGGCGATTTTGATTCTGAAGTAGATTCCACAGTTAGTTCCAGAAGAGGGTCGAGGCGGAGAGAAAAACATATCAACAGAAATGAAGTGATCCATGGTCGGCAACGATCAGGAGGAAGACATGAAGGTGATAGATATGAGAGTGCGTCCATGATGAGCAGTGATATTGAAACAACAAGTTATCAGGATTCTTCAGATGATCAAAGCAGTGTTTCAAGGTTCTCCAGCACCACAGAAGGATCTCAACTTCTTAGAGGCAGACATAGGAGGCGGAGAAGGCGGCCTAGGATGCCTAGAGTTCAAAGATGTTCATCATTCAGTACAATTACAGAATCAACCATGTCACTCAACATCATTACAGTCACACTCAATATGGAAAAAGTGAATTTTCTAGGAATTAGTATTGTCGGTCAAAGCAATAAAAGAGGTGATGGAGGAATTTATGTTGGTTCTATCATGAAAGGGGGTGCAGTTGATTTGGATGGTAGAATAGAACCTGGAGATATGCTTCTACAGGTTAATGATGTCAATTTTGAAAATATGAGCAATGATGATGCTGTAAGGGTGTTAAGAGAAATGGTTCATAAGCCAGGACCCATAACTCTGACAGTGGCCAAGTGCTGGGATCCAACTCCAAAAGGATATTTCACATTACCACCTAGTGAACCAGTTCGTCCAATTGATACCTCAGCATGGGTACAACATACCACACAAATGACTCAGTTTGGACCAACAGCTCAATATGGAAAACAGCCAAACAGTCAGTCCCTTAGCACAGTAACATCGACAAGCTCTTCAATGACAAGTTCTCTACCAGAATCAGACAGATATACTGAACTTCAAGAAGGAGAAGGACTCTCAGTAAACACAGACATGACCACAATAGTTAAAACGATGGCCGCTCCAGACTCTGGTCTTGATATAAGAGACAGGATGTGGCTCAAAATCACTATCCCCAATGCATTTATAGGATCTGATGTAGTAGACTGGCTTTATTCACATGTAGAAGGTTTTCAAGACAGACGTGAAGCAAGAAAGTATGCCTGCAATCTTTTAAAGGCTGGTTTTATTCGTCACACTGTAAACAAGATCACATTCTCAGAACAGTGCTATTATGTTTTTGGAGATCTTTGTGGAAATATGGCCGCCCTTTCAATTAACGAACATGAAGGTGATGGTGATAACGACACTCTGGGACCCCTCCCTACACACCAACAGGGTATCTCATGGATGTCAGGGCCACCAAGTTACGGATATGTTCAAATGCCTACTTACCCACCTCCCCAACCCATGGTGGATACACAGACACCAGGATACGCCCCATCATTTTACAGTGCACATAGTGGCAGTCAAAGCCCCCACAGTGCCAGTGGCAGCTCCAAAAGGAGCGGCGGAGGACGAGGTGATAACGGTGGAGATGGCGATCACAGGAGCAGCGGTGGAAGCAGTAGTGAGAAGAGTGGTAGTAGTAAAGGCAAAAGCAAAAGCAAGGAACTTGAGGCTCGCAGCGTTGAAGGATCAGCTCAGCCACCACAGTTCATGCCAGGGGCTCCCCCTATAGGAGTTCCTATAGGAGTTCCTGTAGGTGCTCCGATGCCCGGGGGTCCCCCTATGCCAGGAATTGCTATGATGCCGAGGCCTCTTGATCAAGTACCCGAAAACGTCTCGGCGAGTAGGAACAGTTTTAGAATGGCTATGGGCAATCCTTGTGAGTTCTTTGTAGATGTCATGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B1WAP7	Segment polarity protein dishevelled homolog DVL-3 OS=Xenopus tropicalis OX=8364 GN=dvl3 PE=2 SV=1
Q6DKE2	Segment polarity protein dishevelled homolog DVL-3 OS=Xenopus laevis OX=8355 GN=dvl3 PE=2 SV=1
O14640	Segment polarity protein dishevelled homolog DVL-1 OS=Homo sapiens OX=9606 GN=DVL1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003351 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00778 all species →	DIX	DIX domain	Family	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF12316 all species →	Dsh_C	Segment polarity protein dishevelled (Dsh) C terminal	Family	Interproscan
PF00610 all species →	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan
PF02377 all species →	Dishevelled	Dishevelled specific domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000591 all species →	Domain	DEP domain	Interproscan
IPR001158 all species →	Domain	DIX domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR038207 all species →	Homologous_superfamily	DIX domain superfamily	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR015506 all species →	Family	Dishevelled-related protein	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR008339 all species →	Family	Dishevelled family	Interproscan
IPR024580 all species →	Domain	Dishevelled C-terminal	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR003351 all species →	Domain	Dishevelled protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10878 all species →	SEGMENT POLARITY PROTEIN DISHEVELLED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016055 all species →	Biological Process	Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02353	DVL; segment polarity protein dishevelled	-	Cushing syndrome	ko04934	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.