Gene detail

Detailed information of evm.model.Ap6.446 in Astrangia poculata

Genomic Location: Ap6:4008355...4027128
NR annotation: XP_020630527.1, neuralized-like protein 4 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.446

atgagtaaacatgacacacaccacacacgctacgccactacaacgcctaactgcaaaaaactgcagcttgctaaacccaagctaacaggcagatgtagaacccctaaacgccctgttgtgcctggcaacggaacaggcagagtacactgcagtaatgctagatgccatgctatgcctgacaaaacaaggaacagtaaacccccttggagtcccgctatgcatgacagtcatgacatgacaggcaatgagcatgaccaagaccaacgctacaacggaggtttttgtaagccagaagactgcagaagaacgaacaacggagcaacaaagccgctggcaacgacgagcggaacaacaaatggaaagctaaaccctaacaggcagcgtggccagccgcttattaaaatagaatgtgtgactgagttgtgggcaggttctatagaagtgggtgtcacaagtcacaatccagatgacattgtgttaccaccgaccatgacaagtatgccgacaggaacatggatgttaagtggaacatcgataattgtgaatggcaaggaagcaaggaaagactactccagtgtcaacctagaaacacttaaggctggcgacaatattggaatactgaaaaaaagtgatggagctcttcatttctttattaatggtcaagatcaaggcgaggcggtcagcaatctacctgctaatgtgtatggtgctgttgacatttatggtgcagcagtgagggtatctatagcatcaggctctccagtacaagaacaagacattgcacattctaataatgaaaatatagttaattccttgagcaatgcacttgtgtttcatcctcgctgtggctcatcagtgtcattatttaatggatatcgtagtgcacacaggcctcgaggcaatgaagaattcaacaatgctgttgttctgacaagtcgccatttgaatgctaatgaacttcttaaagtgcgtgtcgacaaacatttaacaaagtgggcggggtcacttgagattggtgtcactactcacgatcctgaaacattagagtttccatcaacaatgacaaatgttcagccacctggcacatggatgatgtcaggggggagtgtggtatgtgacggcgtcactagcattgaagagtatgggccaacactggacgaaatcaaggttggagacactgttgctgtagtgcgtaaggatgatggctccttgcatttttttgtaaacagcacagatcttggctgtgcggcacagggggtgccagctaatgtgtatggtgtggttgatctgtttggtcaatgtgcacaagtcactattatctcagagacacaggaaaatggagagattgatataaccaatgcacttaatgatgtttcagaggttaccattattgcacaagaaacacagcaacccatagagtgtcctttatcgattccatcgcaggaagctactccagccacaaatgataactgttttaagttcagttcctttcacggtggtcaagtagctgtgagtcataattgccgcagcgctgtacgcatcaaccctctgtgtgaatttaacaatgctattgtaatgagtcacagacctcttagagacgatgaactgtttgaagtgattgtggaaaaacttgttagtcgctggtctggttcaatggaagcaggaataacaacagtccctcctgagcagatgcagtttccaggcaccatgactgatcttgttagtggggcgtggatggtgtctggggcgtctgtgctgcagaatggtatcacaatcaaaaatgggtatgcctgtgacttggacaagttagaagaagggtcccgtcttggaataatgcgtaaatcaggtggatcattgcatttctttgtcaatggacaggactgtggggcagctgcgacaagtgttccatcaggaatctatgccatgattgacttgtatggccagtgtgttcagatctctgtttatgatgaagattacagaggagctcaagttacaccagtccctgctgaacaggcaacaactgagcctgttcctgtcacaacagaaggaatagcaagtaaagttaaatgtggcttccactcgtgttgtgggagaaacattcgattggtgaacaacaagatgactgcgtcaagatctactggattcaaccatggccttgtgttcagtgcaaaaccactggaagaagatgaaatatttgagattgttatagacaaagtaactggcagtcagtggtcaggttcaatagcagtggggatcacaactaaaaccatcccactgttagctgtgcctgcctcagcactggagctgcgagatggaacatggctgatgacaggctcatgtgtcatgaaagatgctgtgatagtgaaagaaaactatggacacagtctggacagactgcaggccaagacgaggattggagtacaaagacaaagagatggcacttttcatgtgtttgttaatggcgaggaccagggagtcgcagctatggatatccctcagatcgttcatgcagtggtggatgtatatggcatggcaaacgttatctccatatcaagcccttcaacagatccttcaactggagtattggtgaatggagaatcacactcttcagtttccccagtgattgagttacaagatcaagacgaagaagatgcgagagaatccatcaccaatttacaaaaatttcttttccataagaactgtggtcagttcatttcactagacagtaaccgtacaactgcgagaagagtggatagctacaatcatggagtagtattgagcgaaacacctcttccagacaatcacctatttcaggtgtgcatcagaaagttgaacagccgctggacggggtctgttatgatcggcgtcacagctcaagacccagactccttgactagccttccgagcacggccaacagcatcaagatctgtccttggattgttgttaataacgcggtgtatgtgaatggaaacaaggtaaacgacaatttacgccgaagtcttgacagtcttcaagagggagacacgcttggagtcttgattgacaagaaaagccggttacacctgctaattaacggagaagacctgggacctattgcccaggccatccccgccagacgattcgcagtgcttgacttgtacgggtgttgcgaggaagtgtctattgtaactgctgatcatggtgaacgagggcgcgtctgcatggaggaaacaaaggctgagagaagctcgggagagcacagtaaaggaccgtgtgattacagacagctctgtgacagattccgtgctagtctcgctataccagatgaatatttcaacacggactgcaagttgaatgtatgttactgtcaagcctgtcacgaagcccgcggtgaaaaacggtacgctgtcagcggtgatccaccatgtcggtatgcgttgcccttgggatggtgtcagtttgcgttaagaattcctccgagagtcgaaagctatcacgtgttcgacaaatggcacgtggcattttacggcactctgattggacggttgagaagaatacttgatcttggagatattccacttcaagtttttagcggtcagcggagaagtggctcgtcaaacaaagaaaacgaagtcccccaactttgcgtgtcccccacaatcctgtgcgcgtgtgaaacacaagccaagagacaggagtacagagatggtacaacaggtaaagtttatcaagctcaggtagctctacagcttctcgtgaagcctgggttctacagaacgggtcgcagtcaccgtgacgtagacgccaacgagctccttgatcaaaacattggcacggaaaatctggattggtatctacagaaccaaggatcgatagtgctaactgcattgcttattaaaattgagccgacataa

Transcript

evm.model.Ap6.446

ATGAGTAAACATGACACACACCACACACGCTACGCCACTACAACGCCTAACTGCAAAAAACTGCAGCTTGCTAAACCCAAGCTAACAGGCAGATGTAGAACCCCTAAACGCCCTGTTGTGCCTGGCAACGGAACAGGCAGAGTACACTGCAGTAATGCTAGATGCCATGCTATGCCTGACAAAACAAGGAACAGTAAACCCCCTTGGAGTCCCGCTATGCATGACAGTCATGACATGACAGGCAATGAGCATGACCAAGACCAACGCTACAACGGAGGTTTTTGTAAGCCAGAAGACTGCAGAAGAACGAACAACGGAGCAACAAAGCCGCTGGCAACGACGAGCGGAACAACAAATGGAAAGCTAAACCCTAACAGGCAGCGTGGCCAGCCGCTTATTAAAATAGAATGTGTGACTGAGTTGTGGGCAGGTTCTATAGAAGTGGGTGTCACAAGTCACAATCCAGATGACATTGTGTTACCACCGACCATGACAAGTATGCCGACAGGAACATGGATGTTAAGTGGAACATCGATAATTGTGAATGGCAAGGAAGCAAGGAAAGACTACTCCAGTGTCAACCTAGAAACACTTAAGGCTGGCGACAATATTGGAATACTGAAAAAAAGTGATGGAGCTCTTCATTTCTTTATTAATGGTCAAGATCAAGGCGAGGCGGTCAGCAATCTACCTGCTAATGTGTATGGTGCTGTTGACATTTATGGTGCAGCAGTGAGGGTATCTATAGCATCAGGCTCTCCAGTACAAGAACAAGACATTGCACATTCTAATAATGAAAATATAGTTAATTCCTTGAGCAATGCACTTGTGTTTCATCCTCGCTGTGGCTCATCAGTGTCATTATTTAATGGATATCGTAGTGCACACAGGCCTCGAGGCAATGAAGAATTCAACAATGCTGTTGTTCTGACAAGTCGCCATTTGAATGCTAATGAACTTCTTAAAGTGCGTGTCGACAAACATTTAACAAAGTGGGCGGGGTCACTTGAGATTGGTGTCACTACTCACGATCCTGAAACATTAGAGTTTCCATCAACAATGACAAATGTTCAGCCACCTGGCACATGGATGATGTCAGGGGGGAGTGTGGTATGTGACGGCGTCACTAGCATTGAAGAGTATGGGCCAACACTGGACGAAATCAAGGTTGGAGACACTGTTGCTGTAGTGCGTAAGGATGATGGCTCCTTGCATTTTTTTGTAAACAGCACAGATCTTGGCTGTGCGGCACAGGGGGTGCCAGCTAATGTGTATGGTGTGGTTGATCTGTTTGGTCAATGTGCACAAGTCACTATTATCTCAGAGACACAGGAAAATGGAGAGATTGATATAACCAATGCACTTAATGATGTTTCAGAGGTTACCATTATTGCACAAGAAACACAGCAACCCATAGAGTGTCCTTTATCGATTCCATCGCAGGAAGCTACTCCAGCCACAAATGATAACTGTTTTAAGTTCAGTTCCTTTCACGGTGGTCAAGTAGCTGTGAGTCATAATTGCCGCAGCGCTGTACGCATCAACCCTCTGTGTGAATTTAACAATGCTATTGTAATGAGTCACAGACCTCTTAGAGACGATGAACTGTTTGAAGTGATTGTGGAAAAACTTGTTAGTCGCTGGTCTGGTTCAATGGAAGCAGGAATAACAACAGTCCCTCCTGAGCAGATGCAGTTTCCAGGCACCATGACTGATCTTGTTAGTGGGGCGTGGATGGTGTCTGGGGCGTCTGTGCTGCAGAATGGTATCACAATCAAAAATGGGTATGCCTGTGACTTGGACAAGTTAGAAGAAGGGTCCCGTCTTGGAATAATGCGTAAATCAGGTGGATCATTGCATTTCTTTGTCAATGGACAGGACTGTGGGGCAGCTGCGACAAGTGTTCCATCAGGAATCTATGCCATGATTGACTTGTATGGCCAGTGTGTTCAGATCTCTGTTTATGATGAAGATTACAGAGGAGCTCAAGTTACACCAGTCCCTGCTGAACAGGCAACAACTGAGCCTGTTCCTGTCACAACAGAAGGAATAGCAAGTAAAGTTAAATGTGGCTTCCACTCGTGTTGTGGGAGAAACATTCGATTGGTGAACAACAAGATGACTGCGTCAAGATCTACTGGATTCAACCATGGCCTTGTGTTCAGTGCAAAACCACTGGAAGAAGATGAAATATTTGAGATTGTTATAGACAAAGTAACTGGCAGTCAGTGGTCAGGTTCAATAGCAGTGGGGATCACAACTAAAACCATCCCACTGTTAGCTGTGCCTGCCTCAGCACTGGAGCTGCGAGATGGAACATGGCTGATGACAGGCTCATGTGTCATGAAAGATGCTGTGATAGTGAAAGAAAACTATGGACACAGTCTGGACAGACTGCAGGCCAAGACGAGGATTGGAGTACAAAGACAAAGAGATGGCACTTTTCATGTGTTTGTTAATGGCGAGGACCAGGGAGTCGCAGCTATGGATATCCCTCAGATCGTTCATGCAGTGGTGGATGTATATGGCATGGCAAACGTTATCTCCATATCAAGCCCTTCAACAGATCCTTCAACTGGAGTATTGGTGAATGGAGAATCACACTCTTCAGTTTCCCCAGTGATTGAGTTACAAGATCAAGACGAAGAAGATGCGAGAGAATCCATCACCAATTTACAAAAATTTCTTTTCCATAAGAACTGTGGTCAGTTCATTTCACTAGACAGTAACCGTACAACTGCGAGAAGAGTGGATAGCTACAATCATGGAGTAGTATTGAGCGAAACACCTCTTCCAGACAATCACCTATTTCAGGTGTGCATCAGAAAGTTGAACAGCCGCTGGACGGGGTCTGTTATGATCGGCGTCACAGCTCAAGACCCAGACTCCTTGACTAGCCTTCCGAGCACGGCCAACAGCATCAAGATCTGTCCTTGGATTGTTGTTAATAACGCGGTGTATGTGAATGGAAACAAGGTAAACGACAATTTACGCCGAAGTCTTGACAGTCTTCAAGAGGGAGACACGCTTGGAGTCTTGATTGACAAGAAAAGCCGGTTACACCTGCTAATTAACGGAGAAGACCTGGGACCTATTGCCCAGGCCATCCCCGCCAGACGATTCGCAGTGCTTGACTTGTACGGGTGTTGCGAGGAAGTGTCTATTGTAACTGCTGATCATGGTGAACGAGGGCGCGTCTGCATGGAGGAAACAAAGGCTGAGAGAAGCTCGGGAGAGCACAGTAAAGGACCGTGTGATTACAGACAGCTCTGTGACAGATTCCGTGCTAGTCTCGCTATACCAGATGAATATTTCAACACGGACTGCAAGTTGAATGTATGTTACTGTCAAGCCTGTCACGAAGCCCGCGGTGAAAAACGGTACGCTGTCAGCGGTGATCCACCATGTCGGTATGCGTTGCCCTTGGGATGGTGTCAGTTTGCGTTAAGAATTCCTCCGAGAGTCGAAAGCTATCACGTGTTCGACAAATGGCACGTGGCATTTTACGGCACTCTGATTGGACGGTTGAGAAGAATACTTGATCTTGGAGATATTCCACTTCAAGTTTTTAGCGGTCAGCGGAGAAGTGGCTCGTCAAACAAAGAAAACGAAGTCCCCCAACTTTGCGTGTCCCCCACAATCCTGTGCGCGTGTGAAACACAAGCCAAGAGACAGGAGTACAGAGATGGTACAACAGGTAAAGTTTATCAAGCTCAGGTAGCTCTACAGCTTCTCGTGAAGCCTGGGTTCTACAGAACGGGTCGCAGTCACCGTGACGTAGACGCCAACGAGCTCCTTGATCAAAACATTGGCACGGAAAATCTGGATTGGTATCTACAGAACCAAGGATCGATAGTGCTAACTGCATTGCTTATTAAAATTGAGCCGACATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1L0Y2	Neuralized-like protein 4 OS=Xenopus tropicalis OX=8364 GN=neurl4 PE=2 SV=1
Q5NCX5	Neuralized-like protein 4 OS=Mus musculus OX=10090 GN=Neurl4 PE=1 SV=1
Q96JN8	Neuralized-like protein 4 OS=Homo sapiens OX=9606 GN=NEURL4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006275 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07177 all species →	Neuralized	Neuralized	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006573 all species →	Domain	Neuralized homology repeat (NHR) domain	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR037962 all species →	Family	Neuralized	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12429 all species →	NEURALIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16777	NEURL4; neuralized-like protein 4	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.