Gene detail

Detailed information of evm.model.Ap6.493 in Astrangia poculata

Genomic Location: Ap6:4503288...4518222
NR annotation: KAJ7393202.1, E3 ubiquitin-protein ligase mib2 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.493

atgaatgacaaacatccattagatcatggatttaacagaatagaatcccgtggaaaaccaggggtgtatgttggtagaagacttggtaaaaccaaagtagaagccaaaggaatttttcgaggtgcccaggtcatgcgagggccagactgggactgggacaaccaggatggaggggaaaggagcttgggacaagttcttgaagtgagaggatgggagacggaaagttttcaaagtgtagcatgtgtaatgtggaagcctacaagtacaaacgtgtatcgtgttggtcacaagggcaaggtggatttgacatgcgttgctgatggttctgggggattctactacaagaaccatttaccaaagcttggacagaaacctgaatccctgattattccgtcaacaagcaacccaacatcaagttcagctgataacactgtgccatttgaagttggtgaaagggtgcgagtgatattagatgtggctatgctaaaggatcttcaggaaggtcatggtggatggaacgataagatggaagaggttattggtcttatgggcacagttcataggatcacagagcgaggtgatgttcgagtacaataccctggctttgccaacagatggacctttcatccagcctctcttacaaaggttgatgagtttcatgttaacgacaaagtgcgtgtcatgaaagataaagaactagtcaagaaacttcaggttgggcatggagagtgggccaatgaaatgactgtggcattagacaaagttggtcaagtcttaaagatttactcagatggtgacattagagtagctgtagcagaccatgcatggacgtttaaccctgcagtgcttgtaaaggaggcatctgctgctgcaccttcaggtcaacagcagcggcaaaccacattacagcgtggggagctccaagggatcttacaaccatcccctgcatctacctcatcttctgcatcgcaacggcagcagcagcatccacaatcaacagcagaaggacaaggacgctcgcaacagtcacaaagagaaatagaccaatcactaagctccttgttagatcacctacgtattaacagttcaagtgacattggatcaatgataatcagcgaagcaggacaaggaaacttggcaaaactaaaagaactgttatgtgttcatccagataaggtgaacattgtacgctcagataagacagccctgcagattgccagccatcaagggttcactggagttgtagagtatttggttcagttgggtgcgaatgtcaatctacaggacactgaaggtgacactgcacttcattatgcagcatttggaaatcagcctggaacagctgcagctttgttgaagggaggggcggatggaaatcggctcaacaagaacaaatgttctccgctgcatgttgccgtaaacaaaggatacacagatgtcgttaaaacgtttctcagcttctcttgtaatgtcaacgcacaggattcgtatggtgacactgttcttcacgatgctatcgccaaggactttgctgagattgtggaactccttataaacttccgtggagtagatttgtcaatcaagaacaagcgaggattcaattgtctccaccacgccgccttaaaagggaacgcaagggcgtcatccttgattgtactgaagtctccagatttactgaatgttgtcaaagacgatggcttctctgcgcttcacctagcgtcacttaacggacatcacaatgttgttgaatgccttattgaggctcactctgacgtcaatctccgtaacggtcgtcagcagacccctctcctactagcagttgacaaaagacacgtgactatagctaagctgcttttagagaacggagcccaagtcaatgctcaagacgatgtcggcgattcaccacttcatgtagtagtcatgtatcattccttgaagtttggaggaagtaatactccaaagaaagagctgtctgtcagcgaacccacatttgtaatcactaaactactggtggatcaaggcgccgacatcacgcttgtgaacaaacacgagaagactcctttacagctgtgcagggatccaaggcttagagaaatcatgctgccaagtgctacaacaccagaacgtccaacgtcggaaaaagctgaatctcaaaatggcgcctcttcagattatgtaacattgtcgccccaggctagttcgagttctgaagttgccatggaaactgacgtcaaatgtcgggtgtgtggtttgcctgctgacgccatatttagtccgtgtggtcacgtggtggcttgtatggagtgtgcaacaatgttaaagaagtgtttccgttgtaaggctgtggttcactcctttagcaaaatacctcagggaggggagagcgaggaattacagtgtatagtgtgttctgatgagccagcctctgtcaggtttgaaccgtgtggacatacgatagcttgtaaagactgcgccacgcgaatgaagaagtgcttgaaatgcaagaatgttattgaacgaaagatatctacctctagagaagaaacccccgcccaacaagcagaattaaatgaaaatgacgagaaatacctagagacccttcattccttgctgtcgcttcaggcgcatgtcagggagatagaagacgctaatatgtgcgccatttgtcttgaaaaagcgcgcaatgtcgctttcatgtgcggacatggcacgtgcgacgcgtgtgcaacgtcactggaagtgtgtcccatgtgcagaaaaccgatcgagaaaaagatcacgctgttcaattga

Transcript

evm.model.Ap6.493

ATGAATGACAAACATCCATTAGATCATGGATTTAACAGAATAGAATCCCGTGGAAAACCAGGGGTGTATGTTGGTAGAAGACTTGGTAAAACCAAAGTAGAAGCCAAAGGAATTTTTCGAGGTGCCCAGGTCATGCGAGGGCCAGACTGGGACTGGGACAACCAGGATGGAGGGGAAAGGAGCTTGGGACAAGTTCTTGAAGTGAGAGGATGGGAGACGGAAAGTTTTCAAAGTGTAGCATGTGTAATGTGGAAGCCTACAAGTACAAACGTGTATCGTGTTGGTCACAAGGGCAAGGTGGATTTGACATGCGTTGCTGATGGTTCTGGGGGATTCTACTACAAGAACCATTTACCAAAGCTTGGACAGAAACCTGAATCCCTGATTATTCCGTCAACAAGCAACCCAACATCAAGTTCAGCTGATAACACTGTGCCATTTGAAGTTGGTGAAAGGGTGCGAGTGATATTAGATGTGGCTATGCTAAAGGATCTTCAGGAAGGTCATGGTGGATGGAACGATAAGATGGAAGAGGTTATTGGTCTTATGGGCACAGTTCATAGGATCACAGAGCGAGGTGATGTTCGAGTACAATACCCTGGCTTTGCCAACAGATGGACCTTTCATCCAGCCTCTCTTACAAAGGTTGATGAGTTTCATGTTAACGACAAAGTGCGTGTCATGAAAGATAAAGAACTAGTCAAGAAACTTCAGGTTGGGCATGGAGAGTGGGCCAATGAAATGACTGTGGCATTAGACAAAGTTGGTCAAGTCTTAAAGATTTACTCAGATGGTGACATTAGAGTAGCTGTAGCAGACCATGCATGGACGTTTAACCCTGCAGTGCTTGTAAAGGAGGCATCTGCTGCTGCACCTTCAGGTCAACAGCAGCGGCAAACCACATTACAGCGTGGGGAGCTCCAAGGGATCTTACAACCATCCCCTGCATCTACCTCATCTTCTGCATCGCAACGGCAGCAGCAGCATCCACAATCAACAGCAGAAGGACAAGGACGCTCGCAACAGTCACAAAGAGAAATAGACCAATCACTAAGCTCCTTGTTAGATCACCTACGTATTAACAGTTCAAGTGACATTGGATCAATGATAATCAGCGAAGCAGGACAAGGAAACTTGGCAAAACTAAAAGAACTGTTATGTGTTCATCCAGATAAGGTGAACATTGTACGCTCAGATAAGACAGCCCTGCAGATTGCCAGCCATCAAGGGTTCACTGGAGTTGTAGAGTATTTGGTTCAGTTGGGTGCGAATGTCAATCTACAGGACACTGAAGGTGACACTGCACTTCATTATGCAGCATTTGGAAATCAGCCTGGAACAGCTGCAGCTTTGTTGAAGGGAGGGGCGGATGGAAATCGGCTCAACAAGAACAAATGTTCTCCGCTGCATGTTGCCGTAAACAAAGGATACACAGATGTCGTTAAAACGTTTCTCAGCTTCTCTTGTAATGTCAACGCACAGGATTCGTATGGTGACACTGTTCTTCACGATGCTATCGCCAAGGACTTTGCTGAGATTGTGGAACTCCTTATAAACTTCCGTGGAGTAGATTTGTCAATCAAGAACAAGCGAGGATTCAATTGTCTCCACCACGCCGCCTTAAAAGGGAACGCAAGGGCGTCATCCTTGATTGTACTGAAGTCTCCAGATTTACTGAATGTTGTCAAAGACGATGGCTTCTCTGCGCTTCACCTAGCGTCACTTAACGGACATCACAATGTTGTTGAATGCCTTATTGAGGCTCACTCTGACGTCAATCTCCGTAACGGTCGTCAGCAGACCCCTCTCCTACTAGCAGTTGACAAAAGACACGTGACTATAGCTAAGCTGCTTTTAGAGAACGGAGCCCAAGTCAATGCTCAAGACGATGTCGGCGATTCACCACTTCATGTAGTAGTCATGTATCATTCCTTGAAGTTTGGAGGAAGTAATACTCCAAAGAAAGAGCTGTCTGTCAGCGAACCCACATTTGTAATCACTAAACTACTGGTGGATCAAGGCGCCGACATCACGCTTGTGAACAAACACGAGAAGACTCCTTTACAGCTGTGCAGGGATCCAAGGCTTAGAGAAATCATGCTGCCAAGTGCTACAACACCAGAACGTCCAACGTCGGAAAAAGCTGAATCTCAAAATGGCGCCTCTTCAGATTATGTAACATTGTCGCCCCAGGCTAGTTCGAGTTCTGAAGTTGCCATGGAAACTGACGTCAAATGTCGGGTGTGTGGTTTGCCTGCTGACGCCATATTTAGTCCGTGTGGTCACGTGGTGGCTTGTATGGAGTGTGCAACAATGTTAAAGAAGTGTTTCCGTTGTAAGGCTGTGGTTCACTCCTTTAGCAAAATACCTCAGGGAGGGGAGAGCGAGGAATTACAGTGTATAGTGTGTTCTGATGAGCCAGCCTCTGTCAGGTTTGAACCGTGTGGACATACGATAGCTTGTAAAGACTGCGCCACGCGAATGAAGAAGTGCTTGAAATGCAAGAATGTTATTGAACGAAAGATATCTACCTCTAGAGAAGAAACCCCCGCCCAACAAGCAGAATTAAATGAAAATGACGAGAAATACCTAGAGACCCTTCATTCCTTGCTGTCGCTTCAGGCGCATGTCAGGGAGATAGAAGACGCTAATATGTGCGCCATTTGTCTTGAAAAAGCGCGCAATGTCGCTTTCATGTGCGGACATGGCACGTGCGACGCGTGTGCAACGTCACTGGAAGTGTGTCCCATGTGCAGAAAACCGATCGAGAAAAAGATCACGCTGTTCAATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96AX9	E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens OX=9606 GN=MIB2 PE=1 SV=4
Q5ZIJ9	E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus OX=9031 GN=MIB2 PE=2 SV=1
Q68LP1	E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus OX=10116 GN=Mib2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000489 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF18346 all species →	SH3_15	Mind bomb SH3 repeat domain	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF06701 all species →	MIB_HERC2	Mib_herc2	Domain	Interproscan
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR040847 all species →	Domain	Mind bomb, SH3 repeat domain	Interproscan
IPR010606 all species →	Domain	Mib-herc2	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR037252 all species →	Homologous_superfamily	Mib/herc2 domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24202 all species →	E3 UBIQUITIN-PROTEIN LIGASE MIB2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.493.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.