Gene detail

Detailed information of evm.model.Ap6.526 in Astrangia poculata

Genomic Location: Ap6:5018761...5025415
NR annotation: KAJ7393183.1, hypothetical protein OS493_006149 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.526

atgagaactctggatgagaaccaacctttaggtgactttatcgttagcgtagcaagacgactttttcctacgggtgaaagtttctggcacgacgagcaaccgatcgatgaagaagggaacaacgaaaccacgcaaaactgtgtgaattgtaatctgttgaaaagtgaatatggtcgtgttctatttgagcgagaccttgcaaagcgaactttaagaattgcaaactacaggcttgctaataaactacagaggcagagaaataaggaagataatggggatgcggctgcttttcaagaaaacgaaatggaacatgctagtgacgaatcagaacactccagctcccggatgaactcgcgacacgcagaactagagcgacaagatgacgttagcttttcagcatccaattttcaagtgccaagcgctaacaaagtagaaaataaagaaactaggactcttctaaatgggtacgtaaatcacctcagcgatagcgaagacagtagctctgaagatgaggacagacatggagatgatgatagtgatgaaaatgataatgatgataataatgaaatcaaacgacttgatcatgacagcgacaatttaaatgatgatgatgatgacgaggaggatggtgataatgatgacgacgacaataatacgaaatatagcgatgattttaaaagtcaagacgcttcttgttcacacgaagacgaagaggtctctctattgtcagacagggttaatgaatctgtgagaatggaggcaagtttaagcttgctagttaacaatggcaacgatgacacgactagttacgccgaaaatactgttgaaaggccaagtagcagcagcagcaacatttctcatggaaacgcttacagcagaaatgcagacaggagctggagtgaaaataatggaaacggagagcttttagcagctggaggtagaaggttctacacaaatgaaataaatcccccaattgcacctgtagctggaaatgtcattagtcaaggagcaagacctaagaactcgtcacagaaaccagtgttaagcaatgcagacagtccaggctacaacaatggaaagatcccctcactggaggtaactggtattaaccagggattccttgctaggcacaccacagatcaaagccttccatgcagctcttacaccgatgatcgtgacctgtcagccagggaatctacctctttgggaaactggtcgcaagcttccttcgctagtaatgatgacagttctacgacactatggagccttcctcgtccacctgctccaaagagaagtgtattgatgcaagagcgcgcttattccggaggggtgaatccacggtacagggaccctgtacatgtgggttaccaaccagtagcaccgacgacgagcttgagtggatggcagttgccaaatcaacaacaaccacatccaggaagatctaattcatactttcctcgtgaagaccaacgagtgtctaatttccctgacccccggttgacgcgttatggcgagtctacgtcacatcgtaacctgtcaggacattttccaggcgccactggtgcccagggtggtaactcgttcaacagacaggcttggatgccaagcggatacgacgccacctggccgagatacgagtatggtagcaatgagccagcattaaattcacctgcggtaaatccacctgcgcctgcaatcactcccagcgttaccctgccaaatgcaagcgcgagattctcaacgaccgtaggtagagatccttggaatttgccgccatacccttcaaatacgatgccaggaagtgtaacctcaagaagtcctgctgtaaatacttataataacaaccaacaagaacgtctagtcgattttaccaccaacagaccatttggtagcgcggagcagcaagaaaatcgccgcttactctcatcagaaactgtttcaacaaggagacaagaggaaggtttgagccggaataatggcttgtcgcaggaagtctcgcaattcccggccccctctgaagataattcgctagttgcactggagcgaaaggtggcggaggcctgcgctgtggtcgaaagagttctcaaagagcgagaagaacgaactaaaaggcaaagagaagcagcgcaaaggcagagagagataagagaacagagacaaagagatgcaagagaaagacgggaacgagaagagcgagaaaggagggaaagagcagagagagaggcgagagaaagagaggatgtggccgcggaagaacgggcgccaattcaagagagtccgatgtggcaatgcgagcattatcagcggcgctgtagtgtgaggtttccatgctgcggagtgttttacccgtgtcaccgctgtcacaatggatcgggggcctgtgacgcagatgataagaaggcaaatcaagcgacgcatgtcaaatgtgctagctgtgggcacgaggaagagataaacgaaagaagtcagaactgtagtagctgtggcgccaaaatgtcagagtatttctgtttcaagtgcaaacattttaccggagtagacaagaatccatttcactgtaacaagtgtggaatatgccgaatctacaaggatagatcgtttcactgtgatgtctgtaacgtttgcctggacaaaagactggaaggaaaacacaaatgtcgaccagattcaggacacgatgagtgctgtatctgcttggaggatgcgttcagcggttgccagatcctgccatgctcacacaaggttcacagagagtgtgccattgcaatgatacagaacggcgtacggagctgcccgatatgtcgccatccattatacagccagggctcgcagcaaatcaatccctttgactag

Transcript

evm.model.Ap6.526

ATGAGAACTCTGGATGAGAACCAACCTTTAGGTGACTTTATCGTTAGCGTAGCAAGACGACTTTTTCCTACGGGTGAAAGTTTCTGGCACGACGAGCAACCGATCGATGAAGAAGGGAACAACGAAACCACGCAAAACTGTGTGAATTGTAATCTGTTGAAAAGTGAATATGGTCGTGTTCTATTTGAGCGAGACCTTGCAAAGCGAACTTTAAGAATTGCAAACTACAGGCTTGCTAATAAACTACAGAGGCAGAGAAATAAGGAAGATAATGGGGATGCGGCTGCTTTTCAAGAAAACGAAATGGAACATGCTAGTGACGAATCAGAACACTCCAGCTCCCGGATGAACTCGCGACACGCAGAACTAGAGCGACAAGATGACGTTAGCTTTTCAGCATCCAATTTTCAAGTGCCAAGCGCTAACAAAGTAGAAAATAAAGAAACTAGGACTCTTCTAAATGGGTACGTAAATCACCTCAGCGATAGCGAAGACAGTAGCTCTGAAGATGAGGACAGACATGGAGATGATGATAGTGATGAAAATGATAATGATGATAATAATGAAATCAAACGACTTGATCATGACAGCGACAATTTAAATGATGATGATGATGACGAGGAGGATGGTGATAATGATGACGACGACAATAATACGAAATATAGCGATGATTTTAAAAGTCAAGACGCTTCTTGTTCACACGAAGACGAAGAGGTCTCTCTATTGTCAGACAGGGTTAATGAATCTGTGAGAATGGAGGCAAGTTTAAGCTTGCTAGTTAACAATGGCAACGATGACACGACTAGTTACGCCGAAAATACTGTTGAAAGGCCAAGTAGCAGCAGCAGCAACATTTCTCATGGAAACGCTTACAGCAGAAATGCAGACAGGAGCTGGAGTGAAAATAATGGAAACGGAGAGCTTTTAGCAGCTGGAGGTAGAAGGTTCTACACAAATGAAATAAATCCCCCAATTGCACCTGTAGCTGGAAATGTCATTAGTCAAGGAGCAAGACCTAAGAACTCGTCACAGAAACCAGTGTTAAGCAATGCAGACAGTCCAGGCTACAACAATGGAAAGATCCCCTCACTGGAGGTAACTGGTATTAACCAGGGATTCCTTGCTAGGCACACCACAGATCAAAGCCTTCCATGCAGCTCTTACACCGATGATCGTGACCTGTCAGCCAGGGAATCTACCTCTTTGGGAAACTGGTCGCAAGCTTCCTTCGCTAGTAATGATGACAGTTCTACGACACTATGGAGCCTTCCTCGTCCACCTGCTCCAAAGAGAAGTGTATTGATGCAAGAGCGCGCTTATTCCGGAGGGGTGAATCCACGGTACAGGGACCCTGTACATGTGGGTTACCAACCAGTAGCACCGACGACGAGCTTGAGTGGATGGCAGTTGCCAAATCAACAACAACCACATCCAGGAAGATCTAATTCATACTTTCCTCGTGAAGACCAACGAGTGTCTAATTTCCCTGACCCCCGGTTGACGCGTTATGGCGAGTCTACGTCACATCGTAACCTGTCAGGACATTTTCCAGGCGCCACTGGTGCCCAGGGTGGTAACTCGTTCAACAGACAGGCTTGGATGCCAAGCGGATACGACGCCACCTGGCCGAGATACGAGTATGGTAGCAATGAGCCAGCATTAAATTCACCTGCGGTAAATCCACCTGCGCCTGCAATCACTCCCAGCGTTACCCTGCCAAATGCAAGCGCGAGATTCTCAACGACCGTAGGTAGAGATCCTTGGAATTTGCCGCCATACCCTTCAAATACGATGCCAGGAAGTGTAACCTCAAGAAGTCCTGCTGTAAATACTTATAATAACAACCAACAAGAACGTCTAGTCGATTTTACCACCAACAGACCATTTGGTAGCGCGGAGCAGCAAGAAAATCGCCGCTTACTCTCATCAGAAACTGTTTCAACAAGGAGACAAGAGGAAGGTTTGAGCCGGAATAATGGCTTGTCGCAGGAAGTCTCGCAATTCCCGGCCCCCTCTGAAGATAATTCGCTAGTTGCACTGGAGCGAAAGGTGGCGGAGGCCTGCGCTGTGGTCGAAAGAGTTCTCAAAGAGCGAGAAGAACGAACTAAAAGGCAAAGAGAAGCAGCGCAAAGGCAGAGAGAGATAAGAGAACAGAGACAAAGAGATGCAAGAGAAAGACGGGAACGAGAAGAGCGAGAAAGGAGGGAAAGAGCAGAGAGAGAGGCGAGAGAAAGAGAGGATGTGGCCGCGGAAGAACGGGCGCCAATTCAAGAGAGTCCGATGTGGCAATGCGAGCATTATCAGCGGCGCTGTAGTGTGAGGTTTCCATGCTGCGGAGTGTTTTACCCGTGTCACCGCTGTCACAATGGATCGGGGGCCTGTGACGCAGATGATAAGAAGGCAAATCAAGCGACGCATGTCAAATGTGCTAGCTGTGGGCACGAGGAAGAGATAAACGAAAGAAGTCAGAACTGTAGTAGCTGTGGCGCCAAAATGTCAGAGTATTTCTGTTTCAAGTGCAAACATTTTACCGGAGTAGACAAGAATCCATTTCACTGTAACAAGTGTGGAATATGCCGAATCTACAAGGATAGATCGTTTCACTGTGATGTCTGTAACGTTTGCCTGGACAAAAGACTGGAAGGAAAACACAAATGTCGACCAGATTCAGGACACGATGAGTGCTGTATCTGCTTGGAGGATGCGTTCAGCGGTTGCCAGATCCTGCCATGCTCACACAAGGTTCACAGAGAGTGTGCCATTGCAATGATACAGAACGGCGTACGGAGCTGCCCGATATGTCGCCATCCATTATACAGCCAGGGCTCGCAGCAAATCAATCCCTTTGACTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96PM5	RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RCHY1 PE=1 SV=1
Q9CR50	RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus OX=10090 GN=Rchy1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000291 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan
PF05495 all species →	zf-CHY	CHY zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008913 all species →	Domain	Zinc finger, CHY-type	Interproscan
IPR037275 all species →	Homologous_superfamily	Zinc finger, CTCHY-type superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR037274 all species →	Homologous_superfamily	Zinc finger, CHY-type superfamily	Interproscan
IPR017921 all species →	Domain	Zinc finger, CTCHY-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21319 all species →	RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.526.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.