Gene detail

Detailed information of evm.model.Ap6.533 in Astrangia poculata

Genomic Location: Ap6:5092659...5096783
NR annotation: XP_020630450.1, uncharacterized protein LOC110067464 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.533

atgagaaccgtcaagtgtgtgctagttggagacgaaaatgtcgacaaacgagaattgttcctcaaatacgtggcgttattgaattctgaggccgaaactgcgacagaaacaaaggaacatgaggatgatcacaagactaactcgctgcaaggcgaagagcccacagatgtttttgaaaatggagatattcctcacgatgaaagcgaagaagtagccgagggagacctcagtccgagcaatcatccaaatttccgagtcattcatcatcgcgattccgagaagggaagtgtgtccagcgtagactcgcaccaggactctctccaccagtggtctggcgcggttaccgtaggaggcaagcattactttttggacctccgcgacgcgcattgccaggaagccttcgacaatatccgacccgaggtttacactgacacagatgtttttcttgtgtgtttctctgtggttcgctcaccctcgtgggaaaatgcgttgaataaatggatacctgaaattcagcatcatcgcccggttaccccgttcattttggtaggcactcagaccgaatggcgcgaactgtgggacgaggacacgtcgaaaaaaccggtttttgcggtcacaggaaccggttatgcgcagcaagtgggcgctgttaagtatttagaattcgctactgcagacaatgaggttaaagagatttttaacgcggctgtttcggtgagtgtgatggatcgaatgggactgtctacatgtcatcccgaatttgacagagatggcttgactttgcttcaccgagctgcaaaactcaatcatattccttctctggaagctctcgtggactccatcgatgtgaatgccaaggacagagagttgcaaagtgcgttggacatagcggtgaaagaaaacaatttgaatgcaatacggtttcttttagaaagtggctgcgaattgccgaacccacccgacgcttggaagaaatgttgcgagttctgggtcagtgacgaaggtgaggattctgagcgcttcgtaaatagcgacgtcaccgaattcacccgacaattgacattcttttacacgaccgcatcgccccgcccactcgcaaaacttcttctgattggtcaaaacggaacggacgtggcgaggtttgtaaacgagacagttcccatcttgccggtaaaatcgctcactattgtaaattcagagggaccggttctgctcgacttttcgcgcgttcagtcttgcctagagtctttaacgataacaaactgtgatttcggttcttcggagcttccaggtactctgtactcagtgaccagtataaaaagtttgagtgtagtgaaatcaggagtatcacggctatccgaacagcttggagagctgaaaagtctacagcgtctgcgtttgagcggtaacaagattcggaaactccctgacacgatttcccgattgcagaagttgaagtttgcgcattgtgatcggaatgcacttgataatctgcccgataccctcggctgcgtaggatcgctagagagtcttgacttgactcataacaaactggagaagttgtcggcatcgcttggcctgctgactaatctgcgaaatctgtggtttgcgagaaatcgtcttaaatttccgccagctcacatccttaacaagggaaccgagagtattttggagttcctaagtgatttcttagacgaccctgtcgctaacattcaaatcaaaatgacgctcgttggaggaagcgaggtcggtaaaaccgcgctggtgaaggctctgagccacaccaaagactggcgaatgaacggagttggtccggttcccaagactgaaggtgtagagatctccaccatgaatctgatgcattccaaactgaaagtgttcgacttggcaggagacgaagccttgttcagctcgcatcacttcttcttgtcagagaacactctttaccaagttgtttttgacatgagcacgtacacggtcagcaagacttccttatcaatttatcagcttggaaggttggaactttggctgcaagtcatcttctccagagctccaaactctcacgtgcttatcgtcggtactcacgccgacgacccgaaagttaccgacgagatccgaacgcgtattcgtgaagatatcgagacgctcttaagcaaatatcgtcgtgagcatagacgccagtttgaaggggaagctgtacctcagtgcggcctttgcgaagggacccatatctgtgagggctcggctactggctcatcattttatgtgcaggaacacgcggccccacacgttccaggtcccgtcccagagccctgcattcctcatgtagtcggttactatgaagttagctgccagggccagtttcccaagaacttcctcagttctaagaatcggagcatgcagaagttcaaggtgggagtgggttccagcgcgcacattctactcaacacgaaagtcagttcccgaatcccgcagaagtgcttgtacgtgcgggacagaatacacgagatgtgtaacgcggagagtgaattaaagaactggccgcttcttacttacgacagactgcgcgagatcgcgaacggctgcggggtgaagcaagacttcaagctcaaggctctgatgacgtattttcattcccaaggagaaattctctggtacgaagacatgccagacattggtgatgtgatctttattgatccttcttggctctccaagcagatctgtcttcttgtcggtgcgcgttctggcgcgagttctggattagatggtatattacggatcgacaacctggcaaagacttggcccgacgtgccggaaggacaacggttttccatgctgactttgttcagaaatctcggattgtgctttcctctgtcagaaactgaagaccttgttcctttccagcttcccattggtcgaccggacaaggacacgtggccgaagcagcctgcagatgaccagcggcagttgagctgtgagttccacttcagtttcctcccaccaacgttcttcagcgaccttacaattgccattaacaggcgcaatttgccaaacagcatcgaagtagaaccaacgttctaccggttctgcatggtctttgcgacaacgtcaatggccagaatcggttgctcgctccactgtaaagaaatgtcggctcatcctttagcagagaacctggacgtgcaccgggttagcattgaaggcgtcccgtatgagaacaagttgaaagtgatcatacgaggaccgttcccttgctgtgttctgcccgatgtgagggctgcgatcaagatggtagtcgacactcgctatcctgggatacgctacattaaacggattgtatgcccgtcttgtgtactcgcctcgttcaagaatcctgcgcttttaaaggaactcgtcaaagagggccacaactgttgttcgtggggccatgtcctagggacagaggccgcaatcatggctggcgttttgcccgacacccggctccctccggaactaccaaagaaaagcgttgtaaggtcgggggtgttttacggcgaggctggtcaaatcctggacgactgctactgcccgaggcttcctgcggtgtttccgattggctttcaaagcgcaccgtttaagaagcgccttcgtgtcaactcgccaattaaagatggcttctccgtgcatttcttttgcgaatgtcccggatattggcatttaactgagggtccaggtttccgcatcccagacatccgagcattcctgaaagtctttggagcgcgcgcctgcaagctcctgaaacttgctttcatgttgcgagaggatgacactcaggacagctcaagtgggtcacacgttccagtcaagatcgtcttgggtgaggcgaaatttcgtgacattctcatcactgacatccaagacctgctcgaacactactttgtggaatttcctgagcttaggaacagctacatgggtttcatgcaagaggatttagactacattcagagtaacgagggactaagccgcggaaagatgtgcaaactgttggagatttcagctgattggtggcgattgggtccgcttgtttgcacgtacaacaacaggacaaatgaacacctctggctgtgtgaaaaacatgcggtataa

Transcript

evm.model.Ap6.533

ATGAGAACCGTCAAGTGTGTGCTAGTTGGAGACGAAAATGTCGACAAACGAGAATTGTTCCTCAAATACGTGGCGTTATTGAATTCTGAGGCCGAAACTGCGACAGAAACAAAGGAACATGAGGATGATCACAAGACTAACTCGCTGCAAGGCGAAGAGCCCACAGATGTTTTTGAAAATGGAGATATTCCTCACGATGAAAGCGAAGAAGTAGCCGAGGGAGACCTCAGTCCGAGCAATCATCCAAATTTCCGAGTCATTCATCATCGCGATTCCGAGAAGGGAAGTGTGTCCAGCGTAGACTCGCACCAGGACTCTCTCCACCAGTGGTCTGGCGCGGTTACCGTAGGAGGCAAGCATTACTTTTTGGACCTCCGCGACGCGCATTGCCAGGAAGCCTTCGACAATATCCGACCCGAGGTTTACACTGACACAGATGTTTTTCTTGTGTGTTTCTCTGTGGTTCGCTCACCCTCGTGGGAAAATGCGTTGAATAAATGGATACCTGAAATTCAGCATCATCGCCCGGTTACCCCGTTCATTTTGGTAGGCACTCAGACCGAATGGCGCGAACTGTGGGACGAGGACACGTCGAAAAAACCGGTTTTTGCGGTCACAGGAACCGGTTATGCGCAGCAAGTGGGCGCTGTTAAGTATTTAGAATTCGCTACTGCAGACAATGAGGTTAAAGAGATTTTTAACGCGGCTGTTTCGGTGAGTGTGATGGATCGAATGGGACTGTCTACATGTCATCCCGAATTTGACAGAGATGGCTTGACTTTGCTTCACCGAGCTGCAAAACTCAATCATATTCCTTCTCTGGAAGCTCTCGTGGACTCCATCGATGTGAATGCCAAGGACAGAGAGTTGCAAAGTGCGTTGGACATAGCGGTGAAAGAAAACAATTTGAATGCAATACGGTTTCTTTTAGAAAGTGGCTGCGAATTGCCGAACCCACCCGACGCTTGGAAGAAATGTTGCGAGTTCTGGGTCAGTGACGAAGGTGAGGATTCTGAGCGCTTCGTAAATAGCGACGTCACCGAATTCACCCGACAATTGACATTCTTTTACACGACCGCATCGCCCCGCCCACTCGCAAAACTTCTTCTGATTGGTCAAAACGGAACGGACGTGGCGAGGTTTGTAAACGAGACAGTTCCCATCTTGCCGGTAAAATCGCTCACTATTGTAAATTCAGAGGGACCGGTTCTGCTCGACTTTTCGCGCGTTCAGTCTTGCCTAGAGTCTTTAACGATAACAAACTGTGATTTCGGTTCTTCGGAGCTTCCAGGTACTCTGTACTCAGTGACCAGTATAAAAAGTTTGAGTGTAGTGAAATCAGGAGTATCACGGCTATCCGAACAGCTTGGAGAGCTGAAAAGTCTACAGCGTCTGCGTTTGAGCGGTAACAAGATTCGGAAACTCCCTGACACGATTTCCCGATTGCAGAAGTTGAAGTTTGCGCATTGTGATCGGAATGCACTTGATAATCTGCCCGATACCCTCGGCTGCGTAGGATCGCTAGAGAGTCTTGACTTGACTCATAACAAACTGGAGAAGTTGTCGGCATCGCTTGGCCTGCTGACTAATCTGCGAAATCTGTGGTTTGCGAGAAATCGTCTTAAATTTCCGCCAGCTCACATCCTTAACAAGGGAACCGAGAGTATTTTGGAGTTCCTAAGTGATTTCTTAGACGACCCTGTCGCTAACATTCAAATCAAAATGACGCTCGTTGGAGGAAGCGAGGTCGGTAAAACCGCGCTGGTGAAGGCTCTGAGCCACACCAAAGACTGGCGAATGAACGGAGTTGGTCCGGTTCCCAAGACTGAAGGTGTAGAGATCTCCACCATGAATCTGATGCATTCCAAACTGAAAGTGTTCGACTTGGCAGGAGACGAAGCCTTGTTCAGCTCGCATCACTTCTTCTTGTCAGAGAACACTCTTTACCAAGTTGTTTTTGACATGAGCACGTACACGGTCAGCAAGACTTCCTTATCAATTTATCAGCTTGGAAGGTTGGAACTTTGGCTGCAAGTCATCTTCTCCAGAGCTCCAAACTCTCACGTGCTTATCGTCGGTACTCACGCCGACGACCCGAAAGTTACCGACGAGATCCGAACGCGTATTCGTGAAGATATCGAGACGCTCTTAAGCAAATATCGTCGTGAGCATAGACGCCAGTTTGAAGGGGAAGCTGTACCTCAGTGCGGCCTTTGCGAAGGGACCCATATCTGTGAGGGCTCGGCTACTGGCTCATCATTTTATGTGCAGGAACACGCGGCCCCACACGTTCCAGGTCCCGTCCCAGAGCCCTGCATTCCTCATGTAGTCGGTTACTATGAAGTTAGCTGCCAGGGCCAGTTTCCCAAGAACTTCCTCAGTTCTAAGAATCGGAGCATGCAGAAGTTCAAGGTGGGAGTGGGTTCCAGCGCGCACATTCTACTCAACACGAAAGTCAGTTCCCGAATCCCGCAGAAGTGCTTGTACGTGCGGGACAGAATACACGAGATGTGTAACGCGGAGAGTGAATTAAAGAACTGGCCGCTTCTTACTTACGACAGACTGCGCGAGATCGCGAACGGCTGCGGGGTGAAGCAAGACTTCAAGCTCAAGGCTCTGATGACGTATTTTCATTCCCAAGGAGAAATTCTCTGGTACGAAGACATGCCAGACATTGGTGATGTGATCTTTATTGATCCTTCTTGGCTCTCCAAGCAGATCTGTCTTCTTGTCGGTGCGCGTTCTGGCGCGAGTTCTGGATTAGATGGTATATTACGGATCGACAACCTGGCAAAGACTTGGCCCGACGTGCCGGAAGGACAACGGTTTTCCATGCTGACTTTGTTCAGAAATCTCGGATTGTGCTTTCCTCTGTCAGAAACTGAAGACCTTGTTCCTTTCCAGCTTCCCATTGGTCGACCGGACAAGGACACGTGGCCGAAGCAGCCTGCAGATGACCAGCGGCAGTTGAGCTGTGAGTTCCACTTCAGTTTCCTCCCACCAACGTTCTTCAGCGACCTTACAATTGCCATTAACAGGCGCAATTTGCCAAACAGCATCGAAGTAGAACCAACGTTCTACCGGTTCTGCATGGTCTTTGCGACAACGTCAATGGCCAGAATCGGTTGCTCGCTCCACTGTAAAGAAATGTCGGCTCATCCTTTAGCAGAGAACCTGGACGTGCACCGGGTTAGCATTGAAGGCGTCCCGTATGAGAACAAGTTGAAAGTGATCATACGAGGACCGTTCCCTTGCTGTGTTCTGCCCGATGTGAGGGCTGCGATCAAGATGGTAGTCGACACTCGCTATCCTGGGATACGCTACATTAAACGGATTGTATGCCCGTCTTGTGTACTCGCCTCGTTCAAGAATCCTGCGCTTTTAAAGGAACTCGTCAAAGAGGGCCACAACTGTTGTTCGTGGGGCCATGTCCTAGGGACAGAGGCCGCAATCATGGCTGGCGTTTTGCCCGACACCCGGCTCCCTCCGGAACTACCAAAGAAAAGCGTTGTAAGGTCGGGGGTGTTTTACGGCGAGGCTGGTCAAATCCTGGACGACTGCTACTGCCCGAGGCTTCCTGCGGTGTTTCCGATTGGCTTTCAAAGCGCACCGTTTAAGAAGCGCCTTCGTGTCAACTCGCCAATTAAAGATGGCTTCTCCGTGCATTTCTTTTGCGAATGTCCCGGATATTGGCATTTAACTGAGGGTCCAGGTTTCCGCATCCCAGACATCCGAGCATTCCTGAAAGTCTTTGGAGCGCGCGCCTGCAAGCTCCTGAAACTTGCTTTCATGTTGCGAGAGGATGACACTCAGGACAGCTCAAGTGGGTCACACGTTCCAGTCAAGATCGTCTTGGGTGAGGCGAAATTTCGTGACATTCTCATCACTGACATCCAAGACCTGCTCGAACACTACTTTGTGGAATTTCCTGAGCTTAGGAACAGCTACATGGGTTTCATGCAAGAGGATTTAGACTACATTCAGAGTAACGAGGGACTAAGCCGCGGAAAGATGTGCAAACTGTTGGAGATTTCAGCTGATTGGTGGCGATTGGGTCCGCTTGTTTGCACGTACAACAACAGGACAAATGAACACCTCTGGCTGTGTGAAAAACATGCGGTATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4R4R6	Cell division control protein 42 homolog OS=Macaca fascicularis OX=9541 GN=CDC42 PE=2 SV=1
Q2KJ93	Cell division control protein 42 homolog OS=Bos taurus OX=9913 GN=CDC42 PE=1 SV=1
P60952	Cell division control protein 42 homolog OS=Canis lupus familiaris OX=9615 GN=CDC42 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003176 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003578 all species →	Family	Small GTPase Rho	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR020859 all species →	Domain	Roc domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072 all species →	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0007163 all species →	Biological Process	establishment or maintenance of cell polarity	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0032488 all species →	Biological Process	Cdc42 protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.533.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.