Gene detail

Detailed information of evm.model.Ap6.540 in Astrangia poculata

Genomic Location: Ap6:5187454...5198313
NR annotation: XP_020630472.1, cholinesterase-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.540

atggcctctcgctatgtgttgtcaacattactgctcttgggtgagctgcagcttttcgtcatcgctggaaaaccagtgcgacatttgtgccctggcgaggtgataaccttaaaatgcgatcacgaagccctgagaaacggcaataaattcaacgacgttatatggaaggtgaatgattctcgcagaaactggcagtggacccagatcacttattgcagcaattctcttgaatgcgcagtcaccgagtcgaaggcagctgatgggatcaaagttttaaatatttcaaaaggaaccatcaccatagagcgcttatcgaggaacgccacggtcagggaggtggattttatgtgtgtgatagagacacaggaaaagcctcacatgcaccgagtaaggattaatctggcagtggaatgtatttggactcaaattggagctgatgtaaatctgaccagacacttaatcgacatggttccgcggcgacatgtgcaagacgtggagctttatgacgtaaatagtcaaaagttcgccttttgctccaacactatgcgctgtacactgatcagaaaagttcgttcaaaaccagatttttggaatcgattgaagcaaaaagattattgcatccttttgaccggaatacaggagggtgatgacggccttgagatgagagtacaaattcattttggacatttcaaatcggcgccccatatttttacgctcaggattcgccatgaagacacaaaaggccttgataatacgtcgtcttcttttaaccaatccacaaaaactgaactgctgcaagcttatgataattctccgacggttcagacagaatccggaaaagtcgttggcaagatcgaaactctttctctgggtaaaccggtgtatgcataccttggtatcccgtatgccgagcctccggtcggagaattgaggtttgctgctccagaacccgcgaaaccttggtcggaaatcataaatgcgacagaatatggagcctcttgtccgcagccggattatccaatacctaatgtgcagagtgctggagaagaaaacgaagattgtcttttcctcaatgtatttgttccatcgactgtcaaacccaatgacaagatggcggtgatggtgtggctacatggcggcggattcactatgggttcttcgactgagtatccaggccacgtcctggcttccttcaatgacgtcattgtggtaacaatcaactataggctgggaattctgggattcttcaacgatcctagcactgacttaaaaggaaattatgcgatgtatgaccagattcttgcgttaaagtgggttcaagccaacattgcaagttttggtggcgatcccaacaaagtgaccgtatttggcgagagcgcaggagcatttagcatctcccttcatttaatctcccctttgtccaaaggtttgttcaacagagccatcatacaaagcggtgctgctacttcgcccttgctatcagggaaagccgctagttctgatacgctgaaggagttaaagaagattgccaactgcgagtcagaagcagagcttattcgctgtttgcgaagcaagagcgccgaggaagttatttcaattcaagaaaaattgccgttgacttccttaactctgcatgaaatcaccacccctgtgactgatgggaaatttcttcctcgccatccacataacctctacaaccatgcaaagtttgctgatcaaaatattgaggttatcattggatttaactcccacgaaggagcgctaagtatcgccctaaagccaggacatatgaatcaaagtgaagttagcagagaagagtttgattccgaagtcagaaatgtacttgtacgaggacagacggacagacccaggcttgtggaagatctggttaaatatcagtacacagatcatgacgatccgaacaacaagactacgataagggacatggcgattaattttcaaggcgattttatggcagttgcgccggcaatgattgaagtaagcgctttagcaaaggctggaaaacgttcatatttgtatgtctttgagcaccgtcctgacttctcaccgtttccaccgtgggctggcgctgtccatggagtggacgttggttttgtactcggggcaccgttcatgagttcgcacatgagtccgctggctgactttttcatgcctagattttccgaaattgagaagggattcagcatgtatatcatgaagctttggacagactttgccaaatttggatctccaactcctccgggctccaactcttcaccggtcacgtggcagcctttcacagaagacgagcagttctacttggccctcgatgtggaaccgaggttgaagcagcgttacagagcaagagaagtgacattttggaataaactcattcctaaggttaccagaaaaggaagaaaaggaaaaatgacaaagaaaccttag

Transcript

evm.model.Ap6.540

GTACTGAGTGGATCGTCAAGGATTATAATCATGGCCTCTCGCTATGTGTTGTCAACATTACTGCTCTTGGGTGAGCTGCAGCTTTTCGTCATCGCTGGAAAACCAGTGCGACATTTGTGCCCTGGCGAGGTGATAACCTTAAAATGCGATCACGAAGCCCTGAGAAACGGCAATAAATTCAACGACGTTATATGGAAGGTGAATGATTCTCGCAGAAACTGGCAGTGGACCCAGATCACTTATTGCAGCAATTCTCTTGAATGCGCAGTCACCGAGTCGAAGGCAGCTGATGGGATCAAAGTTTTAAATATTTCAAAAGGAACCATCACCATAGAGCGCTTATCGAGGAACGCCACGGTCAGGGAGGTGGATTTTATGTGTGTGATAGAGACACAGGAAAAGCCTCACATGCACCGAGTAAGGATTAATCTGGCAGTGGAATGTATTTGGACTCAAATTGGAGCTGATGTAAATCTGACCAGACACTTAATCGACATGGTTCCGCGGCGACATGTGCAAGACGTGGAGCTTTATGACGTAAATAGTCAAAAGTTCGCCTTTTGCTCCAACACTATGCGCTGTACACTGATCAGAAAAGTTCGTTCAAAACCAGATTTTTGGAATCGATTGAAGCAAAAAGATTATTGCATCCTTTTGACCGGAATACAGGAGGGTGATGACGGCCTTGAGATGAGAGTACAAATTCATTTTGGACATTTCAAATCGGCGCCCCATATTTTTACGCTCAGGATTCGCCATGAAGACACAAAAGGCCTTGATAATACGTCGTCTTCTTTTAACCAATCCACAAAAACTGAACTGCTGCAAGCTTATGATAATTCTCCGACGGTTCAGACAGAATCCGGAAAAGTCGTTGGCAAGATCGAAACTCTTTCTCTGGGTAAACCGGTGTATGCATACCTTGGTATCCCGTATGCCGAGCCTCCGGTCGGAGAATTGAGGTTTGCTGCTCCAGAACCCGCGAAACCTTGGTCGGAAATCATAAATGCGACAGAATATGGAGCCTCTTGTCCGCAGCCGGATTATCCAATACCTAATGTGCAGAGTGCTGGAGAAGAAAACGAAGATTGTCTTTTCCTCAATGTATTTGTTCCATCGACTGTCAAACCCAATGACAAGATGGCGGTGATGGTGTGGCTACATGGCGGCGGATTCACTATGGGTTCTTCGACTGAGTATCCAGGCCACGTCCTGGCTTCCTTCAATGACGTCATTGTGGTAACAATCAACTATAGGCTGGGAATTCTGGGATTCTTCAACGATCCTAGCACTGACTTAAAAGGAAATTATGCGATGTATGACCAGATTCTTGCGTTAAAGTGGGTTCAAGCCAACATTGCAAGTTTTGGTGGCGATCCCAACAAAGTGACCGTATTTGGCGAGAGCGCAGGAGCATTTAGCATCTCCCTTCATTTAATCTCCCCTTTGTCCAAAGGTTTGTTCAACAGAGCCATCATACAAAGCGGTGCTGCTACTTCGCCCTTGCTATCAGGGAAAGCCGCTAGTTCTGATACGCTGAAGGAGTTAAAGAAGATTGCCAACTGCGAGTCAGAAGCAGAGCTTATTCGCTGTTTGCGAAGCAAGAGCGCCGAGGAAGTTATTTCAATTCAAGAAAAATTGCCGTTGACTTCCTTAACTCTGCATGAAATCACCACCCCTGTGACTGATGGGAAATTTCTTCCTCGCCATCCACATAACCTCTACAACCATGCAAAGTTTGCTGATCAAAATATTGAGGTTATCATTGGATTTAACTCCCACGAAGGAGCGCTAAGTATCGCCCTAAAGCCAGGACATATGAATCAAAGTGAAGTTAGCAGAGAAGAGTTTGATTCCGAAGTCAGAAATGTACTTGTACGAGGACAGACGGACAGACCCAGGCTTGTGGAAGATCTGGTTAAATATCAGTACACAGATCATGACGATCCGAACAACAAGACTACGATAAGGGACATGGCGATTAATTTTCAAGGCGATTTTATGGCAGTTGCGCCGGCAATGATTGAAGTAAGCGCTTTAGCAAAGGCTGGAAAACGTTCATATTTGTATGTCTTTGAGCACCGTCCTGACTTCTCACCGTTTCCACCGTGGGCTGGCGCTGTCCATGGAGTGGACGTTGGTTTTGTACTCGGGGCACCGTTCATGAGTTCGCACATGAGTCCGCTGGCTGACTTTTTCATGCCTAGATTTTCCGAAATTGAGAAGGGATTCAGCATGTATATCATGAAGCTTTGGACAGACTTTGCCAAATTTGGATCTCCAACTCCTCCGGGCTCCAACTCTTCACCGGTCACGTGGCAGCCTTTCACAGAAGACGAGCAGTTCTACTTGGCCCTCGATGTGGAACCGAGGTTGAAGCAGCGTTACAGAGCAAGAGAAGTGACATTTTGGAATAAACTCATTCCTAAGGTTACCAGAAAAGGAAGAAAAGGAAAAATGACAAAGAAACCTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P04058	Acetylcholinesterase OS=Tetronarce californica OX=7787 GN=ache PE=1 SV=2
P07692	Acetylcholinesterase OS=Torpedo marmorata OX=7788 GN=ache PE=1 SV=2
Q03311	Cholinesterase OS=Mus musculus OX=10090 GN=Bche PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000180 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00135 all species →	COesterase	Carboxylesterase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019819 all species →	Conserved_site	Carboxylesterase type B, conserved site	Interproscan
IPR019826 all species →	Active_site	Carboxylesterase type B, active site	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR051093 all species →	Family	Neuroligin and Bile salt-activated lipase	Interproscan
IPR002018 all species →	Domain	Carboxylesterase, type B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43903 all species →	NEUROLIGIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.Ap6.540. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.540.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.