Gene detail

Detailed information of evm.model.Ap6.55 in Astrangia poculata

Genomic Location: Ap6:420838...446933
NR annotation: XP_022789542.1, phosphoinositide 3-kinase regulatory subunit 4-like isoform X2 [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.55

atggggaaccagctctccgggatcgctccttcgcagatcttgagtgtagagcattattttagcgatctaccagacatcgaattcgatggaagggaaggactatgtgttgtaaaagtatttgcaatccaagacccatcacttccactgaagacgtaccaagatcagctgacagacatcaaaaacagactagttactgctccaaatgttctgccatttcatcactcgattctcactgacaaagccagtcttctgatccggcagtttattaaggataacctatatgacaggataagcactcggccatttcttgatgttatcgaaaagaagtggattgtcttccagttgttaagtgcccttgatcaatgtcactctgtcaaggtttgccatggagacatcaagactgagaatgtaatggtaacaggatggaactgggtcatgttaacagacattgcaagtttcaagccggccttcctccctgaggataacccagcagacttcaattttttctttgacacatctcgtcgtcgcagctgttacattgcacccgagaggtttctggattcacgacaagcagatcagttactagcgagaggttcttcgacagttggtaatggcgacagtcaatcaaacagtgatcccagtctcccagacatggaccttgttagacatcaacagggaacattgaccccagaaatggacatattttcagctggatgtgtaatagctgaactgttcaatgagggtaacaggttatttgatctctcagagctgctgtcttatcgtaatggagattatgatcccacagcaacactgtcaaatattgaagatgctaatatcagggagctagtgggacaaatgatcagcaaagatccaaagagcaggttttctgctgctgagtttttgaagacttacagaggggttatatttccagagcagttttacacctttctcaagaattacatgagcaagtttgccatgttgcctgtgcttactgctgatgagaagattagcagaataaagcgagacattgaacagatcctcaaagaactgcttgtgacaaatgatactgatgataaaactactgctgataaagatggctgtctagtcatcattgtttctcttcttgcttcttgcatcagaagctgcaagtactgtgtgtccaaactgacagtcttggagctactgctaaagatcgctcaccatgtgggtgacgacattattctggaacgtctcctgccctacatactgtatctagtcaacgatcctttaccacaagtcagagctcaagccctgaaaattttaaccaattgtctacagcttgtgcgcagcatgcctcgcagcgatgcaaacatttttccagagtacatcttgccgagtttgtcatggcttacgcaggaccaggaagttattgtgagaattgcttatgcagagaacattgcctccctggctgagactgcactgaagttcttggaaatggcacagttagattttgccaatcaagaaagtaatgatgatgatgctcctatacaatatcagggaagttatgacactgaactacaagcactgcatgaactcatccaaagaaaagttgtgacgctcctcagtgatcctgagaacattgttaaacagacactgcttgaaaatggcatcacacaactgtgtgtgttctttggtcgtcagaaggcaaatgatgttcttctgtcgcatatgatcactttcttgaatgacaagcaggactggcagctgaggggagctttctttgacagtatagttggtgttgctgcttatgttggatggcagagtcttgtgatgctcagaccactcttggaacagggtctgagtgatacagaagagtttgttgtgtgtaaagctttgaatgcactcacatgtctggcagaactgggacttcttcaaaaaccaacactacaagaacttgtctctgagatagttcccttcctttgccatcctaacatgtgggttcgttatggagctgtagggtttgtagctgcagtagctcgcactcttaacatagctgatgtgcactgcaatctgttgccgcttctgcagccatttcttaaacaacctgttgtacaagttgaccaggaggtgattttggtgagtcttctaaaggaacctatcaacagaggcgtatatgactttataatcaggtcaccacatgttgatagcctgtttgacaggacagcagttggttcgaaatctctgtctgcaggtcaaagaccaaattactctgaaacagacgaggcactggtcccagtcttccgcaaacttcactcacaaggcattacagaggaggatgaaaacaaattactctgcctcagagaagtgattctcaagttacacagagctaaaaccagtgccatggaacaacccgagagcaatgatgaggtaatgaagggagacatcaacctcaagaacttgcatataggaaagactgtcaccaggcgacacgcagaattggtgaaatctactgaggggaaaaatgacagtaatacaacagccaagaaaggaggctctaaaaataaaaagacgtccatggttgaacaaccctctatgaaccctgaatggcatcacatgtttggtggagcagaaagtgctgctgtagcgatggtcatgtccaggagagaatcagtgcctgctaatgtacatcgaccaaaatcaccgctaggaaaaactttctctcttcccgctggaggggacaacaaaaatgaaccaacacctttaacctcagctggaacccagcctgttactctgcctcgtacggatgctagttcccagtcaaagaagcagtctgccccaggccttcaagaatttgtgaaccagaatccattgcaagcgcggtatgcaatgtgtaagctggaactgaagaatttggtgcaccacaagagagaacaaaatgccgcagacatgaaagaaaaaactcttcttggaagtgtgctagctgagagaagtaagcctgttcaatctcgctggcatcccaaaggattgttgatagcacatcttcacgaacacaaagctgccatcaacaggcttcaagtgagtccagactatactcactttgctacagcatcagatgatggatcggtgaaactgtgggatctacagaaacttgatggcagaagtctgataaacaagtccagacagacatacagcagagcagtatcacgtcatggtgaagaagcactagtgacctactggcttcaagttgacccaaaagaagaaggaacagtggtagaattggctcagtttgaaacaggttcccagtccgttctgacatacgctacatctcacggtctaatctgtgggtgggatcttcgatcatccaaactggcttggaaactagagaacgatccagcgcatggtgtcatcacatcctttgtggtggacccttgtcacagctggctgactgtggggaccagtgccgggatgttagtctgctgggatctacgctttcagctgccgataacaaatctttctcatccaagaggcgctcgtgttcgtcggctcgccactcacccgaccgagcagtcctgggtcgtttctgccgtgcagggcaacaatgaggtgaccgtgtgggatctggagactggagcgcggaggcaggcactgtgggcaagccacaccccacccctgtcacaaacacaggtctcccctaacgcagttcacgcactgtgcaccagcagacaagacaccagtccgtacatcctgactgcaggctcagatcgtcggattcgcatgtgggacctggcctatcccgagcattctcagatggtggcaggagcggccacagataacttgaacaatgttgtgcttcagtacaaatcgcgtcttattgacggcaccgatgtgctccaagaggtttactgcaagccacgtcaaggtggcgtccatgaagaccttccccgtcgaggaccagaccaccctcccttgggacatcatgaatgcattaatgacattggtgtcactaaattaccacagaactatattatatctgctgggagagacggcgtgctcaagatctggaagtaa

Transcript

evm.model.Ap6.55

ATGGGGAACCAGCTCTCCGGGATCGCTCCTTCGCAGATCTTGAGTGTAGAGCATTATTTTAGCGATCTACCAGACATCGAATTCGATGGAAGGGAAGGACTATGTGTTGTAAAAGTATTTGCAATCCAAGACCCATCACTTCCACTGAAGACGTACCAAGATCAGCTGACAGACATCAAAAACAGACTAGTTACTGCTCCAAATGTTCTGCCATTTCATCACTCGATTCTCACTGACAAAGCCAGTCTTCTGATCCGGCAGTTTATTAAGGATAACCTATATGACAGGATAAGCACTCGGCCATTTCTTGATGTTATCGAAAAGAAGTGGATTGTCTTCCAGTTGTTAAGTGCCCTTGATCAATGTCACTCTGTCAAGGTTTGCCATGGAGACATCAAGACTGAGAATGTAATGGTAACAGGATGGAACTGGGTCATGTTAACAGACATTGCAAGTTTCAAGCCGGCCTTCCTCCCTGAGGATAACCCAGCAGACTTCAATTTTTTCTTTGACACATCTCGTCGTCGCAGCTGTTACATTGCACCCGAGAGGTTTCTGGATTCACGACAAGCAGATCAGTTACTAGCGAGAGGTTCTTCGACAGTTGGTAATGGCGACAGTCAATCAAACAGTGATCCCAGTCTCCCAGACATGGACCTTGTTAGACATCAACAGGGAACATTGACCCCAGAAATGGACATATTTTCAGCTGGATGTGTAATAGCTGAACTGTTCAATGAGGGTAACAGGTTATTTGATCTCTCAGAGCTGCTGTCTTATCGTAATGGAGATTATGATCCCACAGCAACACTGTCAAATATTGAAGATGCTAATATCAGGGAGCTAGTGGGACAAATGATCAGCAAAGATCCAAAGAGCAGGTTTTCTGCTGCTGAGTTTTTGAAGACTTACAGAGGGGTTATATTTCCAGAGCAGTTTTACACCTTTCTCAAGAATTACATGAGCAAGTTTGCCATGTTGCCTGTGCTTACTGCTGATGAGAAGATTAGCAGAATAAAGCGAGACATTGAACAGATCCTCAAAGAACTGCTTGTGACAAATGATACTGATGATAAAACTACTGCTGATAAAGATGGCTGTCTAGTCATCATTGTTTCTCTTCTTGCTTCTTGCATCAGAAGCTGCAAGTACTGTGTGTCCAAACTGACAGTCTTGGAGCTACTGCTAAAGATCGCTCACCATGTGGGTGACGACATTATTCTGGAACGTCTCCTGCCCTACATACTGTATCTAGTCAACGATCCTTTACCACAAGTCAGAGCTCAAGCCCTGAAAATTTTAACCAATTGTCTACAGCTTGTGCGCAGCATGCCTCGCAGCGATGCAAACATTTTTCCAGAGTACATCTTGCCGAGTTTGTCATGGCTTACGCAGGACCAGGAAGTTATTGTGAGAATTGCTTATGCAGAGAACATTGCCTCCCTGGCTGAGACTGCACTGAAGTTCTTGGAAATGGCACAGTTAGATTTTGCCAATCAAGAAAGTAATGATGATGATGCTCCTATACAATATCAGGGAAGTTATGACACTGAACTACAAGCACTGCATGAACTCATCCAAAGAAAAGTTGTGACGCTCCTCAGTGATCCTGAGAACATTGTTAAACAGACACTGCTTGAAAATGGCATCACACAACTGTGTGTGTTCTTTGGTCGTCAGAAGGCAAATGATGTTCTTCTGTCGCATATGATCACTTTCTTGAATGACAAGCAGGACTGGCAGCTGAGGGGAGCTTTCTTTGACAGTATAGTTGGTGTTGCTGCTTATGTTGGATGGCAGAGTCTTGTGATGCTCAGACCACTCTTGGAACAGGGTCTGAGTGATACAGAAGAGTTTGTTGTGTGTAAAGCTTTGAATGCACTCACATGTCTGGCAGAACTGGGACTTCTTCAAAAACCAACACTACAAGAACTTGTCTCTGAGATAGTTCCCTTCCTTTGCCATCCTAACATGTGGGTTCGTTATGGAGCTGTAGGGTTTGTAGCTGCAGTAGCTCGCACTCTTAACATAGCTGATGTGCACTGCAATCTGTTGCCGCTTCTGCAGCCATTTCTTAAACAACCTGTTGTACAAGTTGACCAGGAGGTGATTTTGGTGAGTCTTCTAAAGGAACCTATCAACAGAGGCGTATATGACTTTATAATCAGGTCACCACATGTTGATAGCCTGTTTGACAGGACAGCAGTTGGTTCGAAATCTCTGTCTGCAGGTCAAAGACCAAATTACTCTGAAACAGACGAGGCACTGGTCCCAGTCTTCCGCAAACTTCACTCACAAGGCATTACAGAGGAGGATGAAAACAAATTACTCTGCCTCAGAGAAGTGATTCTCAAGTTACACAGAGCTAAAACCAGTGCCATGGAACAACCCGAGAGCAATGATGAGGTAATGAAGGGAGACATCAACCTCAAGAACTTGCATATAGGAAAGACTGTCACCAGGCGACACGCAGAATTGGTGAAATCTACTGAGGGGAAAAATGACAGTAATACAACAGCCAAGAAAGGAGGCTCTAAAAATAAAAAGACGTCCATGGTTGAACAACCCTCTATGAACCCTGAATGGCATCACATGTTTGGTGGAGCAGAAAGTGCTGCTGTAGCGATGGTCATGTCCAGGAGAGAATCAGTGCCTGCTAATGTACATCGACCAAAATCACCGCTAGGAAAAACTTTCTCTCTTCCCGCTGGAGGGGACAACAAAAATGAACCAACACCTTTAACCTCAGCTGGAACCCAGCCTGTTACTCTGCCTCGTACGGATGCTAGTTCCCAGTCAAAGAAGCAGTCTGCCCCAGGCCTTCAAGAATTTGTGAACCAGAATCCATTGCAAGCGCGGTATGCAATGTGTAAGCTGGAACTGAAGAATTTGGTGCACCACAAGAGAGAACAAAATGCCGCAGACATGAAAGAAAAAACTCTTCTTGGAAGTGTGCTAGCTGAGAGAAGTAAGCCTGTTCAATCTCGCTGGCATCCCAAAGGATTGTTGATAGCACATCTTCACGAACACAAAGCTGCCATCAACAGGCTTCAAGTGAGTCCAGACTATACTCACTTTGCTACAGCATCAGATGATGGATCGGTGAAACTGTGGGATCTACAGAAACTTGATGGCAGAAGTCTGATAAACAAGTCCAGACAGACATACAGCAGAGCAGTATCACGTCATGGTGAAGAAGCACTAGTGACCTACTGGCTTCAAGTTGACCCAAAAGAAGAAGGAACAGTGGTAGAATTGGCTCAGTTTGAAACAGGTTCCCAGTCCGTTCTGACATACGCTACATCTCACGGTCTAATCTGTGGGTGGGATCTTCGATCATCCAAACTGGCTTGGAAACTAGAGAACGATCCAGCGCATGGTGTCATCACATCCTTTGTGGTGGACCCTTGTCACAGCTGGCTGACTGTGGGGACCAGTGCCGGGATGTTAGTCTGCTGGGATCTACGCTTTCAGCTGCCGATAACAAATCTTTCTCATCCAAGAGGCGCTCGTGTTCGTCGGCTCGCCACTCACCCGACCGAGCAGTCCTGGGTCGTTTCTGCCGTGCAGGGCAACAATGAGGTGACCGTGTGGGATCTGGAGACTGGAGCGCGGAGGCAGGCACTGTGGGCAAGCCACACCCCACCCCTGTCACAAACACAGGTCTCCCCTAACGCAGTTCACGCACTGTGCACCAGCAGACAAGACACCAGTCCGTACATCCTGACTGCAGGCTCAGATCGTCGGATTCGCATGTGGGACCTGGCCTATCCCGAGCATTCTCAGATGGTGGCAGGAGCGGCCACAGATAACTTGAACAATGTTGTGCTTCAGTACAAATCGCGTCTTATTGACGGCACCGATGTGCTCCAAGAGGTTTACTGCAAGCCACGTCAAGGTGGCGTCCATGAAGACCTTCCCCGTCGAGGACCAGACCACCCTCCCTTGGGACATCATGAATGCATTAATGACATTGGTGTCACTAAATTACCACAGAACTATATTATATCTGCTGGGAGAGACGGCGTGCTCAAGATCTGGAAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99570	Phosphoinositide 3-kinase regulatory subunit 4 OS=Homo sapiens OX=9606 GN=PIK3R4 PE=1 SV=3
P0C0R5	Phosphoinositide 3-kinase regulatory subunit 4 OS=Rattus norvegicus OX=10116 GN=Pik3r4 PE=3 SV=2
Q5R9I3	Phosphoinositide 3-kinase regulatory subunit 4 OS=Pongo abelii OX=9601 GN=PIK3R4 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001260 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR045162 all species →	Family	Serine/threonine-protein kinase Vps15-like	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17583 all species →	PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005770 all species →	Cellular Component	late endosome	Interproscan
GO:0006623 all species →	Biological Process	protein targeting to vacuole	Interproscan
GO:0016236 all species →	Biological Process	macroautophagy	Interproscan
GO:0030242 all species →	Biological Process	autophagy of peroxisome	Interproscan
GO:0034271 all species →	Cellular Component	phosphatidylinositol 3-kinase complex, class III, type I	Interproscan
GO:0034272 all species →	Cellular Component	phosphatidylinositol 3-kinase complex, class III, type II	Interproscan
GO:0045324 all species →	Biological Process	late endosome to vacuole transport	Interproscan
GO:0071561 all species →	Cellular Component	nucleus-vacuole junction	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08333	PIK3R4, VPS15; phosphoinositide-3-kinase, regulatory subunit 4	EC:2.7.11.1	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.