Detailed information of evm.model.Ap6.578 in Astrangia poculata

Genomic Location: Ap6:5465649...5470384
NR annotation: XP_020630541.1, E3 ubiquitin-protein ligase MARCH2-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q0VD59E3 ubiquitin-protein ligase MARCHF8 OS=Bos taurus OX=9913 GN=MARCHF8 PE=2 SV=1
Q8TCQ1E3 ubiquitin-protein ligase MARCHF1 OS=Homo sapiens OX=9606 GN=MARCHF1 PE=1 SV=1
Q6NZQ8E3 ubiquitin-protein ligase MARCHF1 OS=Mus musculus OX=10090 GN=Marchf1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001153 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12906
all species →		RINGvRING-variant domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011016
all species →		DomainZinc finger, RING-CH-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46065
all species →		E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap6.578.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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