Gene detail

Detailed information of evm.model.Ap6.579 in Astrangia poculata

Genomic Location: Ap6:5472815...5480848
NR annotation: KAJ7382568.1, peroxisome assembly protein (Peroxin-2) [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7F4V8	Peroxisome biogenesis factor 2 OS=Danio rerio OX=7955 GN=pex2 PE=3 SV=1
A0A1L8FZ98	Peroxisome biogenesis factor 2 OS=Xenopus laevis OX=8355 GN=pex2.L PE=3 SV=1
Q06438	Peroxisome biogenesis factor 2 OS=Cricetulus griseus OX=10029 GN=PEX2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006642 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF04757 all species →	Pex2_Pex12	Pex2 / Pex12 amino terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR025654 all species →	Family	Peroxisome biogenesis factor 2/10	Interproscan
IPR045859 all species →	Domain	Peroxisome biogenesis factor 2, HC subclass-RING finger domain	Interproscan
IPR006845 all species →	Domain	Pex, N-terminal	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48178 all species →	PEROXISOME BIOGENESIS FACTOR 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0007031 all species →	Biological Process	peroxisome organization	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016558 all species →	Biological Process	protein import into peroxisome matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06664	PEX2, PXMP3; peroxin-2	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.