Gene detail

Detailed information of evm.model.Ap6.59 in Astrangia poculata

Genomic Location: Ap6:476196...482299
NR annotation: XP_020626386.1, succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9YHT2	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus OX=9031 GN=SDHB PE=1 SV=1
P21913	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Rattus norvegicus OX=10116 GN=Sdhb PE=2 SV=2
Q9CQA3	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Mus musculus OX=10090 GN=Sdhb PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007166 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13534 all species →	Fer4_17	4Fe-4S dicluster domain	Domain	Interproscan
PF13085 all species →	Fer2_3	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004489 all species →	Family	Succinate dehydrogenase/fumarate reductase iron-sulphur protein	Interproscan
IPR009051 all species →	Homologous_superfamily	Alpha-helical ferredoxin	Interproscan
IPR050573 all species →	Family	Succinate Dehydrogenase/Fumarate Reductase Iron-Sulfur	Interproscan
IPR036010 all species →	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan
IPR006058 all species →	Binding_site	2Fe-2S ferredoxin, iron-sulphur binding site	Interproscan
IPR017896 all species →	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR017900 all species →	Conserved_site	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Interproscan
IPR001041 all species →	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR025192 all species →	Domain	Succinate dehydogenase/fumarate reductase N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11921 all species →	SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0009060 all species →	Biological Process	aerobic respiration	Interproscan
GO:0022904 all species →	Biological Process	respiratory electron transport chain	Interproscan
GO:0031966 all species →	Cellular Component	mitochondrial membrane	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0009055 all species →	Molecular Function	electron transfer activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00235	SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit	EC:1.3.5.1	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.