Gene detail

Detailed information of evm.model.Ap6.713 in Astrangia poculata

Genomic Location: Ap6:7034768...7036906
NR annotation: no NCBI-NR hit recorded
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.713

atggaggagagagtccagtctatcatagaggagagagtgcaaaccatcatggaggaaaagaacatttcaaatgcaacagaagttccaagtgtaagaaacataaaagaacagagacaggagggaagccatttgtgtgtaactagtgtggcaaaaagtgtcaatcatacagctaaacgtaagcggcgtaaaagaactggtacaggagagaaaccttttgagtgtaactggtgcgggaagtgttttagtcagggaggacatcttacggaacatgaacgaactcacacaggagagaaaccttttgagtgtgaccactgtggaaaaagatacagtcattcggcaaatcttaagcaacataaaagaacccacacaggggagaggccttatgaatgtaaggagtgtgggaagtggtttagtcagcctcagaatctaaagaaacataaacgaacacacacaggagagaagccttttgaatgtgaccagtgcggaaagtgttttggtcaggcaaataacctcacggaacataaaaaaatacacacagtagaagagaagatttttgcgtgtaaccagtgtggcaaacgtttttctcgtacaacatacctgaagcaacatgaaaaaattcactcaggagagaagcctttccaatgtgacttgtgcgggaagtgtttcagtcgggcaggagctctaaagaaacatgcaagatcacatacaggagagaagccttttgaatgcgatcagtgtggcaagttctttactcaaactggacatcttaaacaacataaaagaactcactcaggagtgaaaccttatgtgtgtaaccattgtggcaaaaggtatggtcatccattcagtcttaagcaacatgaaagaactcacacagcagagaagacttttgaatgtgaccagtgtgaaaagagttttagtcagtcaggacaactcaaacgacataaaagaacacacttaggagaaaggccttttgaatgcaagaaatgtggcaagtgttttaaacgttcaagaaatctcagggaacatgatagaacgcatacaggagaaaggccatatgcgtgtgaatattgtggtaaaagcttccgtaataaagcatatctgtcactacataaaagaagtcacacaggagaaaagccttttgtgtgtgaccattgtgggaaacgttttactcattcagcgtaccttaagcaacataaaagaactcacacgggagagaagccatttgaatgcaaacagtgcgggaagtgctacactcggtcagaaacacttaagattcatgcgaggtggcatacaggagagaagccttttcaatgtaaccagtgtggcaagcgttatactcaagcagcacaccttaagcaacataaaaaatcacacacaggagagaagccttatgaatgtaaccagtgtggcagacgttttagtcaggcaggacatcttaggctacataaaagaactcacacaggagagaaaccttttaaatgcaacgagtgtggcaagtgtttcactcgggcaacggcacttaagagacatgcgacaaagcatagtacagaagagaagccttttgaatgtaacgtgtgtggcaagttttttcatcaggaatgtcggcttaacgaacacaaaaaagcccacacagcaccaaggccttttgaatgtgacatttgcggaaaatgttttactcagataggacatcttgacatacatagaagaattcatacaggagagaagcctttcaaatgtaattattgtgacaagtgtttcaattgtccaggaacgctaaagagacatacaagagtgcatacaggagattatccatttaaatgtgatcagtgtgacagacgttttattgaggtaaaaagactagaggaacatgtgcgatttcacacaggagagaaacctttcaaatgtaaccagtgtgacaagtgttacagtcgggcatccactctaaggagacatgaaagaataatacatactggagagaagcattatgagtgcaacctatgtggaaaggtcttcagccaggcagtagatcttaagggtcatataaaaataactcacaatgcagagaatgaagagcctggtaattccttcagtatcgctacatttataagtaccattacagaaatcaagaaggaatga

Transcript

evm.model.Ap6.713

ATGGAGGAGAGAGTCCAGTCTATCATAGAGGAGAGAGTGCAAACCATCATGGAGGAAAAGAACATTTCAAATGCAACAGAAGTTCCAAGTGTAAGAAACATAAAAGAACAGAGACAGGAGGGAAGCCATTTGTGTGTAACTAGTGTGGCAAAAAGTGTCAATCATACAGCTAAACGTAAGCGGCGTAAAAGAACTGGTACAGGAGAGAAACCTTTTGAGTGTAACTGGTGCGGGAAGTGTTTTAGTCAGGGAGGACATCTTACGGAACATGAACGAACTCACACAGGAGAGAAACCTTTTGAGTGTGACCACTGTGGAAAAAGATACAGTCATTCGGCAAATCTTAAGCAACATAAAAGAACCCACACAGGGGAGAGGCCTTATGAATGTAAGGAGTGTGGGAAGTGGTTTAGTCAGCCTCAGAATCTAAAGAAACATAAACGAACACACACAGGAGAGAAGCCTTTTGAATGTGACCAGTGCGGAAAGTGTTTTGGTCAGGCAAATAACCTCACGGAACATAAAAAAATACACACAGTAGAAGAGAAGATTTTTGCGTGTAACCAGTGTGGCAAACGTTTTTCTCGTACAACATACCTGAAGCAACATGAAAAAATTCACTCAGGAGAGAAGCCTTTCCAATGTGACTTGTGCGGGAAGTGTTTCAGTCGGGCAGGAGCTCTAAAGAAACATGCAAGATCACATACAGGAGAGAAGCCTTTTGAATGCGATCAGTGTGGCAAGTTCTTTACTCAAACTGGACATCTTAAACAACATAAAAGAACTCACTCAGGAGTGAAACCTTATGTGTGTAACCATTGTGGCAAAAGGTATGGTCATCCATTCAGTCTTAAGCAACATGAAAGAACTCACACAGCAGAGAAGACTTTTGAATGTGACCAGTGTGAAAAGAGTTTTAGTCAGTCAGGACAACTCAAACGACATAAAAGAACACACTTAGGAGAAAGGCCTTTTGAATGCAAGAAATGTGGCAAGTGTTTTAAACGTTCAAGAAATCTCAGGGAACATGATAGAACGCATACAGGAGAAAGGCCATATGCGTGTGAATATTGTGGTAAAAGCTTCCGTAATAAAGCATATCTGTCACTACATAAAAGAAGTCACACAGGAGAAAAGCCTTTTGTGTGTGACCATTGTGGGAAACGTTTTACTCATTCAGCGTACCTTAAGCAACATAAAAGAACTCACACGGGAGAGAAGCCATTTGAATGCAAACAGTGCGGGAAGTGCTACACTCGGTCAGAAACACTTAAGATTCATGCGAGGTGGCATACAGGAGAGAAGCCTTTTCAATGTAACCAGTGTGGCAAGCGTTATACTCAAGCAGCACACCTTAAGCAACATAAAAAATCACACACAGGAGAGAAGCCTTATGAATGTAACCAGTGTGGCAGACGTTTTAGTCAGGCAGGACATCTTAGGCTACATAAAAGAACTCACACAGGAGAGAAACCTTTTAAATGCAACGAGTGTGGCAAGTGTTTCACTCGGGCAACGGCACTTAAGAGACATGCGACAAAGCATAGTACAGAAGAGAAGCCTTTTGAATGTAACGTGTGTGGCAAGTTTTTTCATCAGGAATGTCGGCTTAACGAACACAAAAAAGCCCACACAGCACCAAGGCCTTTTGAATGTGACATTTGCGGAAAATGTTTTACTCAGATAGGACATCTTGACATACATAGAAGAATTCATACAGGAGAGAAGCCTTTCAAATGTAATTATTGTGACAAGTGTTTCAATTGTCCAGGAACGCTAAAGAGACATACAAGAGTGCATACAGGAGATTATCCATTTAAATGTGATCAGTGTGACAGACGTTTTATTGAGGTAAAAAGACTAGAGGAACATGTGCGATTTCACACAGGAGAGAAACCTTTCAAATGTAACCAGTGTGACAAGTGTTACAGTCGGGCATCCACTCTAAGGAGACATGAAAGAATAATACATACTGGAGAGAAGCATTATGAGTGCAACCTATGTGGAAAGGTCTTCAGCCAGGCAGTAGATCTTAAGGGTCATATAAAAATAACTCACAATGCAGAGAATGAAGAGCCTGGTAATTCCTTCAGTATCGCTACATTTATAAGTACCATTACAGAAATCAAGAAGGAATGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF13912 all species →	zf-C2H2_6	C2H2-type zinc finger	Domain	Interproscan
PF13465 all species →	zf-H2C2_2	Zinc-finger double domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050636 all species →	Family	C2H2-type zinc finger domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47772 all species →	ZINC FINGER PROTEIN 200	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.Ap6.713. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.