Gene detail

Detailed information of evm.model.Ap6.830 in Astrangia poculata

Genomic Location: Ap6:8048638...8056978
NR annotation: CAH3107719.1, unnamed protein product [Porites lobata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23097	Collagenase 3 (Fragment) OS=Rattus norvegicus OX=10116 GN=Mmp13 PE=1 SV=1
P33435	Collagenase 3 OS=Mus musculus OX=10090 GN=Mmp13 PE=1 SV=1
P45452	Collagenase 3 OS=Homo sapiens OX=9606 GN=MMP13 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000392 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00413 all species →	Peptidase_M10	Matrixin	Domain	Interproscan
PF01471 all species →	PG_binding_1	Putative peptidoglycan binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006026 all species →	Domain	Peptidase, metallopeptidase	Interproscan
IPR033739 all species →	Domain	Peptidase M10A, catalytic domain	Interproscan
IPR036365 all species →	Homologous_superfamily	PGBD-like superfamily	Interproscan
IPR021158 all species →	Binding_site	Peptidase M10A, cysteine switch, zinc binding site	Interproscan
IPR001818 all species →	Domain	Peptidase M10, metallopeptidase	Interproscan
IPR021190 all species →	Family	Peptidase M10A	Interproscan
IPR002477 all species →	Domain	Peptidoglycan binding-like	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10201 all species →	MATRIX METALLOPROTEINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0030574 all species →	Biological Process	collagen catabolic process	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.830.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.