Gene detail

Detailed information of evm.model.Ap6.967_evm.model.Ap6.970 in Astrangia poculata

Genomic Location: Ap6:9224382...9267843
NR annotation: XP_020609155.1, eukaryotic translation initiation factor 4 gamma 3-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.967_evm.model.Ap6.970

atggttcttcaaggaagaccaccgcaacaaaatcctcgtgggccgccttcatcacagcaaaggcaagacgattttaatccaagacaagcacagttccagattccaccacaaatgcaacagaatatagtcatggggcagatgcctggtcagatgcaggctgcccaaggacaacctcgcctcccaaatcaacagcagttcttccacagccaaagagccatgagaattccaagacaccaagctccaaacaaccctccaatgtactcttcacctccagggggtcccatagtacaaatgatgggaccacctggggcgccacagttcattccgcaaggacagactgcgccatttatgacaccgcctgttgagtatacccaaatacccatgagcggtccacctcagatgcaattcagacctcagcaaccaatgcagggtcaatttacgcctgtctctggtccttcacagccacaaggaccttacggctatccacagacgacagtttatcccatgggacagccttcacaacctgtttatatcgtcagagctcctgcggcccccatgactggaatgccgcagtttcaaactcaaagttttgaacctcgtgcacgtgagagaaaaataatccagattaaagatcccaatagtaacaaggatgtaacacaagaaatcttaaatcgccaaccatcgggcagtataacaagcagtactggtggcacccctaataattctacaccagatatttcaggacagtccagtagctcaagcacacctcccctgacgtcacaacagcaagcagaggccaatgtgcgggcacagtttgcggcgcaggtcgctgcaacattagctaatgataatgatgagaagcctaaaaagcctgtcgagtatataatccagaagccaccggtaaataataaaaccccagcagtagatactgttaaaataaaagaagttgcagatatatcaaaagacaaagtagtgaaagagactgaagttaattcaactagtaatgctgttacagaacctaagttacctgaaaagcctgttgaaaaggctgtagaaacacagcccaaagaggatgttgtaaaaagacaaccaaaagaagccgtgcagggctctaaacttaacgaaggagtttcggcagagaattcattggggtcaaaatctgtggtcagttcagtagatgcaatcacatccacaaaagaaataatttccaatgtcagagtggaaatctttactgcagatgaagtgcgcaacaaggaagcacaacagagcagtgcagctgttagtgatgtagttaaaactgcagttgaacctgcaaaagagactgttgagcaagctgcaactgaagtagttcctgcaagtgaggcaaagacattaaatggacctgtagcactatccagtgaggaggtagaaaaaacagaagaagtaataagtgttgagactcagcccgagctccaagctccacctgttgaaaatgttccagagcctcccgcagacaacaaagttactgaagaggctgatcagcaagttgccgaacctgagtcagcagctaaagaaactgcagaagcggcagttttgccatcggcgtctgagccagaagatgtagttggtgctgagaaggtgaatggtcatgaaactgatgtgaaggtgtccgctgcagctccaaagaatcctgttgatacacaagcggcagcagccaaagatatgaagaagaagaaacagaaacaacgtctcaaagacatggagaaacgctcttcagagaagggcatggatcttatggaggcttacacagaaaagcctgtccaagaagaggttcctgaagaaaatgaggaaccagctgttgaagaaacacaaacacaaacacaggaggaaaatgaggaggctcaatctgaggaagagacatgggaggataaagaagagtttccagaaccagagggtggaaagctcacatacgaaagagatttcctgttgcagttccagtcgaatccaatgtgcatgttgaagccagaaggcctacctgacttggaagttgtcctaggccaagcacgacccccttctaaatcaggctatcaacagaacaaaatgccaaaaattgatggtggtgaaaatatgtttttgccttcgtatcttcgacagaattcaaggggtggtaaccaatctggccaaagagcaggacgtaacagaaatgtgcaaccaaagaaggtcatcgagcttgcaccgaaaaatccgggaagtgagttgaaaagagctgagaatagatgggtgcgaccaagtgaagttgccaaagatgctagtgaagaggaaaaaaagactgaggagctgttccgtaaagtaaggagcattctgaacaagttgactcctcagaagtttcagacactaacacagcagattattgacctagatatcgacactgcagaaagactagaaggtgctatcgaccttatatttgagaaggccatagatgaagctgcattcagtgtagcttatgctaacatgtgcagatgtctcattcctaaaaaagttgttgtggagaaggatggtgcgaaaaaagaaataaccttccgcaagattctgctgaacaagtgtcagaaagagtttgagaaagaaaaatccgttgagaagagaattcatgaaaagctggaggaactttcaagcaaagggcttagtgaagaggaactccaggcgaagaaaagcgacctccaagatgaggagacccttctcaaacgtcgcaccttgggaaacatacggtttattggtgaactatttaagctcaagatgctgacagagaacatcatgcatgactgcgtagtgaagctgctgaagagtaatgacgaggaggcatttgagtgcttgtgcaaattgcttgtgactattggaaaagatcttgatcatgttaaagccaagccaagagttgatcagtactttgcccaaatcaacaaaataatcacagcacggataacatcagctcgtgtgcgattcatgatgcaagacattgttgaactgcgaaaaaaagactgggtccctcgcagggaggacaacaaccccaaaactattgatcagatccacaaggaggctgccgaaaaggctaagaagacgcagatgatgattcagatggcaaaacaggacaagaagctaagagcaaatatgggtggtcgtgacagtcctcgacccaacgtcgttgcgccaggtgatgaaacctggaccacagttggcagaggaccaagaaatgtcagcgttgatccaaagaagttccagaacatcaagcgccctgttgattctgagaacatctcacttggacctggcggcaaaggatacggagcatgggctagaggtagcagtggaggaacgggagcagtaggtgctggggctggtccatcagctgccactgcaggccctgttcctggtactgccgctgacgacaacagacctactggtaacaggtattctgccttggcgggtgagaggaaattttcagcacctgcaagagcctctagcggctctagtcgccaagaaccgcgtagtccaatatctggaggtggacggcgaggacctttcccgggaggagaacgagagaaggcccttgaagctgtgcgagcagtgacacagccaaagcgtaacacccaagagcgtgaaggaggaagggagtcgcccagactgactccagaggcagcttcccctgtggagagcacttctgcttctgtttctccagcaccagaactgtcagaagaagtaatgaaaaagaaatcaaagtcgattattgaggagtaccttgacattagagacatgaaggaggcagttgaatgttttaaagaacttcagtccccaacaacacatcatgtctttgtgaatgaggcattcaactttacattgtcgaagagaacttctgatagaaatgccactggtagactgttgcatttcttgctccgtgatggggtacttacagccgaacaatacctcaatgggattgacgggatatttaaaaacgctgaagaagacgaaattgacattccacagctgtggaagtacctctcagagttaatgggtccgacagcatttgatggaaatcttgatcttgatgagctattttttcaacgggtgctgaaatatgtgtcgaaatacaaggctgctaaattctttgcacacatgttgcaggctgctactaatgagtcgagtcgcgaagatgtgtccgccattttgagtagatatagcttgaggttaaatgccttctttgacactgaagaagaagctgttgaattcgctaaagacaagaatattgaatttgcccttggacaggctaattcatcagagaacacaggctcaactagccaacattctgctagaatacaagaagaacttaggactcttatattgaagaggaaagccaggaacgaagaagtgtttgaatggattgataaaaatgtttctccaaccgactcaaaggaggcgccatttattagaactcttgtaacagctgtttgtgaagatacaatggaaagagaagaaggaggccagtgcaaatgcaatgttgatcatctgaaggacaggaaaaatctcctccaaaagtacatcgacgacaataccaatcttgaacttcaagctctttatgcagtgcaggcactattcgtccagcttgatcacccaccaggtttcatcaagtcgtattttgacagcttgtatgacgaggaaatcatcacagaggaatcattcaacgcctgggaaagcagttctgaagaggaacgaggcaagggcgtggctgtggccgccagttcagaattcttccgctggcttagaagcgccgctgaggagcctggggaagagagttga

Transcript

evm.model.Ap6.967_evm.model.Ap6.970

ATGGTTCTTCAAGGAAGACCACCGCAACAAAATCCTCGTGGGCCGCCTTCATCACAGCAAAGGCAAGACGATTTTAATCCAAGACAAGCACAGTTCCAGATTCCACCACAAATGCAACAGAATATAGTCATGGGGCAGATGCCTGGTCAGATGCAGGCTGCCCAAGGACAACCTCGCCTCCCAAATCAACAGCAGTTCTTCCACAGCCAAAGAGCCATGAGAATTCCAAGACACCAAGCTCCAAACAACCCTCCAATGTACTCTTCACCTCCAGGGGGTCCCATAGTACAAATGATGGGACCACCTGGGGCGCCACAGTTCATTCCGCAAGGACAGACTGCGCCATTTATGACACCGCCTGTTGAGTATACCCAAATACCCATGAGCGGTCCACCTCAGATGCAATTCAGACCTCAGCAACCAATGCAGGGTCAATTTACGCCTGTCTCTGGTCCTTCACAGCCACAAGGACCTTACGGCTATCCACAGACGACAGTTTATCCCATGGGACAGCCTTCACAACCTGTTTATATCGTCAGAGCTCCTGCGGCCCCCATGACTGGAATGCCGCAGTTTCAAACTCAAAGTTTTGAACCTCGTGCACGTGAGAGAAAAATAATCCAGATTAAAGATCCCAATAGTAACAAGGATGTAACACAAGAAATCTTAAATCGCCAACCATCGGGCAGTATAACAAGCAGTACTGGTGGCACCCCTAATAATTCTACACCAGATATTTCAGGACAGTCCAGTAGCTCAAGCACACCTCCCCTGACGTCACAACAGCAAGCAGAGGCCAATGTGCGGGCACAGTTTGCGGCGCAGGTCGCTGCAACATTAGCTAATGATAATGATGAGAAGCCTAAAAAGCCTGTCGAGTATATAATCCAGAAGCCACCGGTAAATAATAAAACCCCAGCAGTAGATACTGTTAAAATAAAAGAAGTTGCAGATATATCAAAAGACAAAGTAGTGAAAGAGACTGAAGTTAATTCAACTAGTAATGCTGTTACAGAACCTAAGTTACCTGAAAAGCCTGTTGAAAAGGCTGTAGAAACACAGCCCAAAGAGGATGTTGTAAAAAGACAACCAAAAGAAGCCGTGCAGGGCTCTAAACTTAACGAAGGAGTTTCGGCAGAGAATTCATTGGGGTCAAAATCTGTGGTCAGTTCAGTAGATGCAATCACATCCACAAAAGAAATAATTTCCAATGTCAGAGTGGAAATCTTTACTGCAGATGAAGTGCGCAACAAGGAAGCACAACAGAGCAGTGCAGCTGTTAGTGATGTAGTTAAAACTGCAGTTGAACCTGCAAAAGAGACTGTTGAGCAAGCTGCAACTGAAGTAGTTCCTGCAAGTGAGGCAAAGACATTAAATGGACCTGTAGCACTATCCAGTGAGGAGGTAGAAAAAACAGAAGAAGTAATAAGTGTTGAGACTCAGCCCGAGCTCCAAGCTCCACCTGTTGAAAATGTTCCAGAGCCTCCCGCAGACAACAAAGTTACTGAAGAGGCTGATCAGCAAGTTGCCGAACCTGAGTCAGCAGCTAAAGAAACTGCAGAAGCGGCAGTTTTGCCATCGGCGTCTGAGCCAGAAGATGTAGTTGGTGCTGAGAAGGTGAATGGTCATGAAACTGATGTGAAGGTGTCCGCTGCAGCTCCAAAGAATCCTGTTGATACACAAGCGGCAGCAGCCAAAGATATGAAGAAGAAGAAACAGAAACAACGTCTCAAAGACATGGAGAAACGCTCTTCAGAGAAGGGCATGGATCTTATGGAGGCTTACACAGAAAAGCCTGTCCAAGAAGAGGTTCCTGAAGAAAATGAGGAACCAGCTGTTGAAGAAACACAAACACAAACACAGGAGGAAAATGAGGAGGCTCAATCTGAGGAAGAGACATGGGAGGATAAAGAAGAGTTTCCAGAACCAGAGGGTGGAAAGCTCACATACGAAAGAGATTTCCTGTTGCAGTTCCAGTCGAATCCAATGTGCATGTTGAAGCCAGAAGGCCTACCTGACTTGGAAGTTGTCCTAGGCCAAGCACGACCCCCTTCTAAATCAGGCTATCAACAGAACAAAATGCCAAAAATTGATGGTGGTGAAAATATGTTTTTGCCTTCGTATCTTCGACAGAATTCAAGGGGTGGTAACCAATCTGGCCAAAGAGCAGGACGTAACAGAAATGTGCAACCAAAGAAGGTCATCGAGCTTGCACCGAAAAATCCGGGAAGTGAGTTGAAAAGAGCTGAGAATAGATGGGTGCGACCAAGTGAAGTTGCCAAAGATGCTAGTGAAGAGGAAAAAAAGACTGAGGAGCTGTTCCGTAAAGTAAGGAGCATTCTGAACAAGTTGACTCCTCAGAAGTTTCAGACACTAACACAGCAGATTATTGACCTAGATATCGACACTGCAGAAAGACTAGAAGGTGCTATCGACCTTATATTTGAGAAGGCCATAGATGAAGCTGCATTCAGTGTAGCTTATGCTAACATGTGCAGATGTCTCATTCCTAAAAAAGTTGTTGTGGAGAAGGATGGTGCGAAAAAAGAAATAACCTTCCGCAAGATTCTGCTGAACAAGTGTCAGAAAGAGTTTGAGAAAGAAAAATCCGTTGAGAAGAGAATTCATGAAAAGCTGGAGGAACTTTCAAGCAAAGGGCTTAGTGAAGAGGAACTCCAGGCGAAGAAAAGCGACCTCCAAGATGAGGAGACCCTTCTCAAACGTCGCACCTTGGGAAACATACGGTTTATTGGTGAACTATTTAAGCTCAAGATGCTGACAGAGAACATCATGCATGACTGCGTAGTGAAGCTGCTGAAGAGTAATGACGAGGAGGCATTTGAGTGCTTGTGCAAATTGCTTGTGACTATTGGAAAAGATCTTGATCATGTTAAAGCCAAGCCAAGAGTTGATCAGTACTTTGCCCAAATCAACAAAATAATCACAGCACGGATAACATCAGCTCGTGTGCGATTCATGATGCAAGACATTGTTGAACTGCGAAAAAAAGACTGGGTCCCTCGCAGGGAGGACAACAACCCCAAAACTATTGATCAGATCCACAAGGAGGCTGCCGAAAAGGCTAAGAAGACGCAGATGATGATTCAGATGGCAAAACAGGACAAGAAGCTAAGAGCAAATATGGGTGGTCGTGACAGTCCTCGACCCAACGTCGTTGCGCCAGGTGATGAAACCTGGACCACAGTTGGCAGAGGACCAAGAAATGTCAGCGTTGATCCAAAGAAGTTCCAGAACATCAAGCGCCCTGTTGATTCTGAGAACATCTCACTTGGACCTGGCGGCAAAGGATACGGAGCATGGGCTAGAGGTAGCAGTGGAGGAACGGGAGCAGTAGGTGCTGGGGCTGGTCCATCAGCTGCCACTGCAGGCCCTGTTCCTGGTACTGCCGCTGACGACAACAGACCTACTGGTAACAGGTATTCTGCCTTGGCGGGTGAGAGGAAATTTTCAGCACCTGCAAGAGCCTCTAGCGGCTCTAGTCGCCAAGAACCGCGTAGTCCAATATCTGGAGGTGGACGGCGAGGACCTTTCCCGGGAGGAGAACGAGAGAAGGCCCTTGAAGCTGTGCGAGCAGTGACACAGCCAAAGCGTAACACCCAAGAGCGTGAAGGAGGAAGGGAGTCGCCCAGACTGACTCCAGAGGCAGCTTCCCCTGTGGAGAGCACTTCTGCTTCTGTTTCTCCAGCACCAGAACTGTCAGAAGAAGTAATGAAAAAGAAATCAAAGTCGATTATTGAGGAGTACCTTGACATTAGAGACATGAAGGAGGCAGTTGAATGTTTTAAAGAACTTCAGTCCCCAACAACACATCATGTCTTTGTGAATGAGGCATTCAACTTTACATTGTCGAAGAGAACTTCTGATAGAAATGCCACTGGTAGACTGTTGCATTTCTTGCTCCGTGATGGGGTACTTACAGCCGAACAATACCTCAATGGGATTGACGGGATATTTAAAAACGCTGAAGAAGACGAAATTGACATTCCACAGCTGTGGAAGTACCTCTCAGAGTTAATGGGTCCGACAGCATTTGATGGAAATCTTGATCTTGATGAGCTATTTTTTCAACGGGTGCTGAAATATGTGTCGAAATACAAGGCTGCTAAATTCTTTGCACACATGTTGCAGGCTGCTACTAATGAGTCGAGTCGCGAAGATGTGTCCGCCATTTTGAGTAGATATAGCTTGAGGTTAAATGCCTTCTTTGACACTGAAGAAGAAGCTGTTGAATTCGCTAAAGACAAGAATATTGAATTTGCCCTTGGACAGGCTAATTCATCAGAGAACACAGGCTCAACTAGCCAACATTCTGCTAGAATACAAGAAGAACTTAGGACTCTTATATTGAAGAGGAAAGCCAGGAACGAAGAAGTGTTTGAATGGATTGATAAAAATGTTTCTCCAACCGACTCAAAGGAGGCGCCATTTATTAGAACTCTTGTAACAGCTGTTTGTGAAGATACAATGGAAAGAGAAGAAGGAGGCCAGTGCAAATGCAATGTTGATCATCTGAAGGACAGGAAAAATCTCCTCCAAAAGTACATCGACGACAATACCAATCTTGAACTTCAAGCTCTTTATGCAGTGCAGGCACTATTCGTCCAGCTTGATCACCCACCAGGTTTCATCAAGTCGTATTTTGACAGCTTGTATGACGAGGAAATCATCACAGAGGAATCATTCAACGCCTGGGAAAGCAGTTCTGAAGAGGAACGAGGCAAGGGCGTGGCTGTGGCCGCCAGTTCAGAATTCTTCCGCTGGCTTAGAAGCGCCGCTGAGGAGCCTGGGGAAGAGAGTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43432	Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens OX=9606 GN=EIF4G3 PE=1 SV=2
Q80XI3	Eukaryotic translation initiation factor 4 gamma 3 OS=Mus musculus OX=10090 GN=Eif4g3 PE=1 SV=2
Q04637	Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens OX=9606 GN=EIF4G1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001108 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02854 all species →	MIF4G	MIF4G domain	Repeat	Interproscan
PF02020 all species →	W2	eIF4-gamma/eIF5/eIF2-epsilon	Repeat	Interproscan
PF02847 all species →	MA3	MA3 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR003307 all species →	Domain	W2 domain	Interproscan
IPR003890 all species →	Domain	MIF4G-like, type 3	Interproscan
IPR045208 all species →	Family	Initiation factor 4G	Interproscan
IPR003891 all species →	Domain	Initiation factor eIF-4 gamma, MA3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23253 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0016281 all species →	Cellular Component	eukaryotic translation initiation factor 4F complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03260	EIF4G; translation initiation factor 4G	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.