Gene detail

Detailed information of evm.model.Ap7.1108 in Astrangia poculata

Genomic Location: Ap7:12228863...12245464
NR annotation: XP_020627529.1, uncharacterized protein LOC110064772 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.1108

atgtttatatattcattgccaatactggacagggaagtacgtctgaactgcgggttacgactacaacagaagtttgccgacatggagttacatctcaatccgaccctctatttacttttcaccttcttcgcaacatttcttaacgtggcctcgggaagctgtaacgattttgatcttggagttggaagtggatcaattgctgacagcaagataactgcttcatctgttcaaaacgccagcacaccagccaaaaatggccgattgaaccatacagcgggatcaccatggtgtgcaggaacgagtgacactaacagattgatctacaaacacttcatatcatctgtgctgtgtccactcagggaaattctcgaggagatcattgaatttatactttacaaatttcagctttttaagggcaatgaagacagaaactctgaagttaagcacgttctttttgatgggatctttgcaaagtatctgcgattcttgccaaagacgcaccataacagtgtctgtatgaggacagaggtctttggagtgaaacgtaaaccagagaaccttgctcttggtaaacctgcaactcagtcttcaacttacagtgatgccgcagcatcaggtgtagcagggaaagcagtggatggaacttctgataccgactttaatcatggacattgttcacatactttactaaacaaccctagctggtggcgagtagacctgggtctagatcccgtgccagtctctgaagtatatattgccaacaggttttcgaccaacgaacttataaggcaacgaaataaagactataaaataacaataggtagcaacccaaatgtgaccgataatcctcaatgcatgggactgtacagttttattcaatttaaagcatcagctgtatgtttcacgaatccattgacgactggcagatacgtcggtattgtgaccaagaattcgttccttaccctttgtgaagtagaaatctacttacgagaaaaccttgcatttgggaagcaaacggatcagataagcacttacagagactgcgttagtagcagagcagtggatggtaacagcaacacgagcctttatgctggatccacatgtgcaagcacaaggagagcaacaaagccctggtggagagtagacctgggccgagaggagccagtgtctgaattgtacatagttaacagaggagactgttgcggagctaggttgtataggttcgagatcagagtaggaccaatgtccagagatggaggtgtgactaatccaaagtgtggtgatattcacactgttcctcaaggaaaaggtttatctttctactgtcgtccttacttgtacgggagatatgtaaccgtcagaagtctaagaaataatgagtttctgacgctgtgtgaagtcgaggtgtattctgccagaagagcatgtcaaatccaggctatcggtgcggccagcagtaagacattaccacacgacagtttttcagcctcgtcaacaactggctttgacgcaccttctaaaggtcgactgaacggacgtggcgcctggtcacctagcaacgacaataatgttgatgactatctacaaattgacttgcaatacgagttctttatctgtgctgtggctacccaaggaaagtcaacagaagatcactggacaacaaagtacaagttacattcgtcgcttaacaataaggactgggttacctaccaagaaaacaggcaggataaggtcttcaatggcaattctggaagaaacgacatagtgaaacacaatcttaaagaaatcacaagtgcaagatttatcaggttccaaccaacgcttttctcaacccgcaaggctttgaggatagaattgtttggagtacttaaaccggcagttccttcacaagcgcccagtaattttactgtggttacctggaataccacaagtattgaagcatcctggcagttaccaccagcagactccaggcgtggaatcatcacaggatttaaactgttttacaaaaagaaagacgctattggcatgtcaaccacgttaacaattaacggaggagcaatcagttttaaatatgttactgagcttgaaatgtacacagaatatgaattccaagtgttggctttcacttctgctggtgacggacccaagagctctgtaaaggtcgaaagaacaatgggagatgctctagaatggtccaaacaaaagccgtcttcgccgacatttgcaccaaatttacgtcaaggaggagtaacggcaaaaataacgttacctcgttttccagggcatgcaaggttttttcaaatcatcgttataaggcttagctcagactataacggcgttgtagaaacaccaggaaattttacaccgcaagatttgctgacatacgaagatgctcatgcctctccaattcccacagcctatgtgactttccagtttggaggaaatgattttgacatgtaccaggaatttgttattgggaatggagcgctgtcaaataataatggtagcgaaaaggagtaccacaacaaaccactacagccgagtaccaagtatagagtgtttctgagggcctttgtcaaaaagaatgtgtatatctcgaccaatttcgtgaaggttgaaaccaaagtgccacccaccataattgaagacgtgtttcctacttcagtcatatgtgaaaagcaaaccccatgtttactctcttgttatgctaccagcgatactccagttaactactcttggacaaaggttggccagggttcagtaagtgatgacgtcaagtttatgaacaagagtattgttgtcactcctcgtggtgcacaggattatggggtgtacgtgtgccacgctacaaacagcttcggtaccgcgtctaatgagataaccttaatagagggccgcaagttatcagctggagtagctatgaacaagagaggtgacagcctatcccaaatctatggcattactgtcatcgctttgtcctgtactgtttttatgcttcttattgtaattggcctgctgatatgccgactaaaacgagctgagcttatcaaaagtacaacgactgcagataagaacaccgccaatgacgttaacgagcatgactcaccaccgcgtgatccgcatgaacctgaaggagactcgtatatggagctcgaacccagaccattccagaggcagtctaatgcaccttcagaataccagtcattacaaggtgctgacgtatcttctgcatactataatgtgggatttgcccaacccagacctttggaaagacagtcacatgcaccttcagagtaccagtcattagagggaactaacgcatcttccacgtattacaatgtgggatttgctcaactcagtcctatggaggatcagtcacgtgcaccttcggggtgtcagtcattccagcgcacaaacatatcttccgcatattataatgtggcatttattaatgccaacagtgaacaagattccgacgtttactatgaaataggaaatacccagtgttaa

Transcript

evm.model.Ap7.1108

ATGTTTATATATTCATTGCCAATACTGGACAGGGAAGTACGTCTGAACTGCGGGTTACGACTACAACAGAAGTTTGCCGACATGGAGTTACATCTCAATCCGACCCTCTATTTACTTTTCACCTTCTTCGCAACATTTCTTAACGTGGCCTCGGGAAGCTGTAACGATTTTGATCTTGGAGTTGGAAGTGGATCAATTGCTGACAGCAAGATAACTGCTTCATCTGTTCAAAACGCCAGCACACCAGCCAAAAATGGCCGATTGAACCATACAGCGGGATCACCATGGTGTGCAGGAACGAGTGACACTAACAGATTGATCTACAAACACTTCATATCATCTGTGCTGTGTCCACTCAGGGAAATTCTCGAGGAGATCATTGAATTTATACTTTACAAATTTCAGCTTTTTAAGGGCAATGAAGACAGAAACTCTGAAGTTAAGCACGTTCTTTTTGATGGGATCTTTGCAAAGTATCTGCGATTCTTGCCAAAGACGCACCATAACAGTGTCTGTATGAGGACAGAGGTCTTTGGAGTGAAACGTAAACCAGAGAACCTTGCTCTTGGTAAACCTGCAACTCAGTCTTCAACTTACAGTGATGCCGCAGCATCAGGTGTAGCAGGGAAAGCAGTGGATGGAACTTCTGATACCGACTTTAATCATGGACATTGTTCACATACTTTACTAAACAACCCTAGCTGGTGGCGAGTAGACCTGGGTCTAGATCCCGTGCCAGTCTCTGAAGTATATATTGCCAACAGGTTTTCGACCAACGAACTTATAAGGCAACGAAATAAAGACTATAAAATAACAATAGGTAGCAACCCAAATGTGACCGATAATCCTCAATGCATGGGACTGTACAGTTTTATTCAATTTAAAGCATCAGCTGTATGTTTCACGAATCCATTGACGACTGGCAGATACGTCGGTATTGTGACCAAGAATTCGTTCCTTACCCTTTGTGAAGTAGAAATCTACTTACGAGAAAACCTTGCATTTGGGAAGCAAACGGATCAGATAAGCACTTACAGAGACTGCGTTAGTAGCAGAGCAGTGGATGGTAACAGCAACACGAGCCTTTATGCTGGATCCACATGTGCAAGCACAAGGAGAGCAACAAAGCCCTGGTGGAGAGTAGACCTGGGCCGAGAGGAGCCAGTGTCTGAATTGTACATAGTTAACAGAGGAGACTGTTGCGGAGCTAGGTTGTATAGGTTCGAGATCAGAGTAGGACCAATGTCCAGAGATGGAGGTGTGACTAATCCAAAGTGTGGTGATATTCACACTGTTCCTCAAGGAAAAGGTTTATCTTTCTACTGTCGTCCTTACTTGTACGGGAGATATGTAACCGTCAGAAGTCTAAGAAATAATGAGTTTCTGACGCTGTGTGAAGTCGAGGTGTATTCTGCCAGAAGAGCATGTCAAATCCAGGCTATCGGTGCGGCCAGCAGTAAGACATTACCACACGACAGTTTTTCAGCCTCGTCAACAACTGGCTTTGACGCACCTTCTAAAGGTCGACTGAACGGACGTGGCGCCTGGTCACCTAGCAACGACAATAATGTTGATGACTATCTACAAATTGACTTGCAATACGAGTTCTTTATCTGTGCTGTGGCTACCCAAGGAAAGTCAACAGAAGATCACTGGACAACAAAGTACAAGTTACATTCGTCGCTTAACAATAAGGACTGGGTTACCTACCAAGAAAACAGGCAGGATAAGGTCTTCAATGGCAATTCTGGAAGAAACGACATAGTGAAACACAATCTTAAAGAAATCACAAGTGCAAGATTTATCAGGTTCCAACCAACGCTTTTCTCAACCCGCAAGGCTTTGAGGATAGAATTGTTTGGAGTACTTAAACCGGCAGTTCCTTCACAAGCGCCCAGTAATTTTACTGTGGTTACCTGGAATACCACAAGTATTGAAGCATCCTGGCAGTTACCACCAGCAGACTCCAGGCGTGGAATCATCACAGGATTTAAACTGTTTTACAAAAAGAAAGACGCTATTGGCATGTCAACCACGTTAACAATTAACGGAGGAGCAATCAGTTTTAAATATGTTACTGAGCTTGAAATGTACACAGAATATGAATTCCAAGTGTTGGCTTTCACTTCTGCTGGTGACGGACCCAAGAGCTCTGTAAAGGTCGAAAGAACAATGGGAGATGCTCTAGAATGGTCCAAACAAAAGCCGTCTTCGCCGACATTTGCACCAAATTTACGTCAAGGAGGAGTAACGGCAAAAATAACGTTACCTCGTTTTCCAGGGCATGCAAGGTTTTTTCAAATCATCGTTATAAGGCTTAGCTCAGACTATAACGGCGTTGTAGAAACACCAGGAAATTTTACACCGCAAGATTTGCTGACATACGAAGATGCTCATGCCTCTCCAATTCCCACAGCCTATGTGACTTTCCAGTTTGGAGGAAATGATTTTGACATGTACCAGGAATTTGTTATTGGGAATGGAGCGCTGTCAAATAATAATGGTAGCGAAAAGGAGTACCACAACAAACCACTACAGCCGAGTACCAAGTATAGAGTGTTTCTGAGGGCCTTTGTCAAAAAGAATGTGTATATCTCGACCAATTTCGTGAAGGTTGAAACCAAAGTGCCACCCACCATAATTGAAGACGTGTTTCCTACTTCAGTCATATGTGAAAAGCAAACCCCATGTTTACTCTCTTGTTATGCTACCAGCGATACTCCAGTTAACTACTCTTGGACAAAGGTTGGCCAGGGTTCAGTAAGTGATGACGTCAAGTTTATGAACAAGAGTATTGTTGTCACTCCTCGTGGTGCACAGGATTATGGGGTGTACGTGTGCCACGCTACAAACAGCTTCGGTACCGCGTCTAATGAGATAACCTTAATAGAGGGCCGCAAGTTATCAGCTGGAGTAGCTATGAACAAGAGAGGTGACAGCCTATCCCAAATCTATGGCATTACTGTCATCGCTTTGTCCTGTACTGTTTTTATGCTTCTTATTGTAATTGGCCTGCTGATATGCCGACTAAAACGAGCTGAGCTTATCAAAAGTACAACGACTGCAGATAAGAACACCGCCAATGACGTTAACGAGCATGACTCACCACCGCGTGATCCGCATGAACCTGAAGGAGACTCGTATATGGAGCTCGAACCCAGACCATTCCAGAGGCAGTCTAATGCACCTTCAGAATACCAGTCATTACAAGGTGCTGACGTATCTTCTGCATACTATAATGTGGGATTTGCCCAACCCAGACCTTTGGAAAGACAGTCACATGCACCTTCAGAGTACCAGTCATTAGAGGGAACTAACGCATCTTCCACGTATTACAATGTGGGATTTGCTCAACTCAGTCCTATGGAGGATCAGTCACGTGCACCTTCGGGGTGTCAGTCATTCCAGCGCACAAACATATCTTCCGCATATTATAATGTGGCATTTATTAATGCCAACAGTGAACAAGATTCCGACGTTTACTATGAAATAGGAAATACCCAGTGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P42530	Discoidin-2 OS=Dictyostelium discoideum OX=44689 GN=dscE PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000101 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051941 all species →	Family	Blood Group Antigen-Binding Lectin	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR006585 all species →	Domain	Fucolectin tachylectin-4 pentraxin-1	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45713 all species →	FTP DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap7.1108.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.