Detailed information of evm.model.Ap7.1158 in Astrangia poculata

Genomic Location: Ap7:12779652...12783422
NR annotation: XP_020627570.1, SWI/SNF complex subunit SMARCC2-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6PDG5SWI/SNF complex subunit SMARCC2 OS=Mus musculus OX=10090 GN=Smarcc2 PE=1 SV=2
Q8TAQ2SWI/SNF complex subunit SMARCC2 OS=Homo sapiens OX=9606 GN=SMARCC2 PE=1 SV=1
P97496SWI/SNF complex subunit SMARCC1 OS=Mus musculus OX=10090 GN=Smarcc1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004403 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16495
all species →		SWIRM-assoc_1SWIRM-associated region 1FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032451
all species →		DomainSMARCC, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12802
all species →		SWI/SNF COMPLEX-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0016514
all species →		Cellular ComponentSWI/SNF complexInterproscan
GO:0042393
all species →		Molecular Functionhistone bindingInterproscan
GO:0045893
all species →		Biological Processpositive regulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap7.1158.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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