Gene detail

Detailed information of evm.model.Ap7.1322 in Astrangia poculata

Genomic Location: Ap7:14372962...14446016
NR annotation: CAH3177543.1, unnamed protein product [Porites lobata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.1322

atgtccccatacttgttcataatagcagctgagatactagccaattttataagaagggataaagacataaaggggtttgaaacgaatgaagtagaacacaaactaagccaatatgccgacgatacaaccttaatactcgacggttctgagggctcatttcttcatgcagttgcagtcttggacggttttcacataatctctgggcttaaggtgaattacgagaaaacaaaagtgctatgggtgggttcagcaaaagaaagagaaccaataaaatgtgacaaatcggaaatttcctgggtgaaaggaaaagtatttgcacttggaatttggtttgcaacagacaggaagacaatgctccgctgcaattacgaggacagtcttaaaaagcatggaggaagggatattttcacctgcaatcttcacaaagacgacatccccacgttaggggtctgtaaccccttcgtccaagaggtactggaagcctgggcagagttacattttacggatgtcactgacatcactgatgtaaatgttggtgaccagatcatctggtacaattctcttattcgaataaacgaccgacccgttttccataaacattggttcaaccacggaatttgcaaaatttcccacttattggacgagaatggcaccctgcttaggtacgacgagctgaggaaccaggcattctttgacgatatcagtgaaaaactatctgacattgaacgagaatcaacaacaaaaaatataaaactactcatgaactctaaacattatattaaatgtaaacaagaaactactactactactactactactactactgctgctactgctactgcttctgctactcctactgctactgctactgcttctgctactcctactactactgctactgctactgctattgctaccctactactactgccattgctaattcactaccactgccactgccactgcaccctactacactgctactgctacccactaccctgcactgctattgctttcaattactaccacaaagaaaatctatgcttgttcctggcagctggactagacaaagttagaagtgatgtttctcttcttgtttgggacataaatgttcaactaagtgtgagagacagtaatcaggaaaagagacattctggagttaccggtggtaaacagtctcccatcactgtaggaacaggctttcaggatccttcatcaataggaaacagacctcttgcagaactatcaacttcagatccaactttgtccttggcatggtctccttatgatcctaacgtattaattgctggacaggcacaaaagtttctgagagtgtttgacataagagacaccacacgtccccatatcgcagcagtaacaaaagcagtttatggagtgtgtgttgaccctcatgttgaacatagaattgcctcattctcagagggtcctcctggtgttatgtgtatctgggatgaccgaaattttgaaaaaccattaatgaacatgactcaatcgtgtcctgtgacggccattgcctggagcccaacacgatctggcttactagcaacacttggtaaagaaagtcctgtagtacagctttacgacattcaacatgcttcagtagcttctccagcttatggtgttggatatgagacagaaccttcattcatagaaaggagtgtgaaaccatcacagagagctgtatcttcattctcatggcatcctactcaagaaaatcacatgcttacaatatctccatcaggactggtacaagacttcacaatatttgaaagaatatcagttgcttggtctccaagctcccatcttacctggggttgtggaaagcatttattggaatgttcacaaaagcctgcaaagacgcctctggaggaggacatttccttaaaaatgaagagaagagcatttgctggatatggaattgatcatcaacaggtacaagacatagcaagaataacatctgatcccaagcttgttaagttgtggtcatggatttgtcgtgtaaagtctatgagggagcaagataaatccaaaagtcttaaatatgatggcatcaaggctattattggtggagagagcagtgctggagctgtagtggcaagaagcaaatctgactcttaccaagagcagcgtcttgtagccccagtgtattttagtgatgagagaaagctggctctttctttgtgtggatgggattttaaaagtgctggagtccctctaacagaatatcttaaagagctgcaggcatctggacagcatgagagagctgcagctgtagccttattcaataacaagatcaaggaagcaattgcaatactgagctcacaacaggcaaataaaaatataggagctaaaggtactacactgaacgtggttgccatggcactgtcaggttatacagaagaaaagaagactctctggagagatatgtgccggtcactgtgtggccagatggagagcccttaccttagatcagcattcgctttccttaccacagaagctgatcactttgacagtattttggctgagaagggaattgaaattgaggacagggtagcttttgcatgcaaataccttcctgacaataagctgtctcaattcctagagaatttgtcgacaaagttgagtgacgcaggtgacttagatggcattcttctaacaggaatctcattagatggagttaacttgctagaaaagtatgtaaataatacaactgatgtccagacggccagtctagtcattgtcaattgtgttcctcatatctccagtgaagtttcaaaagatgcaagagtttcatcttggatagaaagttatagaaatttgctggacatgtggagactttggcaccaaaggtcgttgtttgatattcactataacctgaaggactccacccagaaacctcctcaacaagtgtttgtatcttgtaacttttgtggaaattccatactcactaacatgctatcaacaggttctagaccaagaattcgtgcacagtactgcaatccctcaaatagaacaaagattatggcttgccccgggtgtcgtaaacctcttcctagatgtgctctctgtctggttcacatgggaacaccttcatcactttcacagaagcaaccaaatcaagatcctagtgcagaaaaaccagcaaatgtagggagtgtaaatacttttaacaactggtttacatggtgtcaatcatgtcgtcatgggggacattccaatcacgttgttgattggttcaaggagcacgctgaatgtcctgtcacagggtgtggctgtcactgtatgaacttagattctgttgctatggcaatgccaaacaatgacatcaattcctcaacttaa

Transcript

evm.model.Ap7.1322

ATGTCCCCATACTTGTTCATAATAGCAGCTGAGATACTAGCCAATTTTATAAGAAGGGATAAAGACATAAAGGGGTTTGAAACGAATGAAGTAGAACACAAACTAAGCCAATATGCCGACGATACAACCTTAATACTCGACGGTTCTGAGGGCTCATTTCTTCATGCAGTTGCAGTCTTGGACGGTTTTCACATAATCTCTGGGCTTAAGGTGAATTACGAGAAAACAAAAGTGCTATGGGTGGGTTCAGCAAAAGAAAGAGAACCAATAAAATGTGACAAATCGGAAATTTCCTGGGTGAAAGGAAAAGTATTTGCACTTGGAATTTGGTTTGCAACAGACAGGAAGACAATGCTCCGCTGCAATTACGAGGACAGTCTTAAAAAGCATGGAGGAAGGGATATTTTCACCTGCAATCTTCACAAAGACGACATCCCCACGTTAGGGGTCTGTAACCCCTTCGTCCAAGAGGTACTGGAAGCCTGGGCAGAGTTACATTTTACGGATGTCACTGACATCACTGATGTAAATGTTGGTGACCAGATCATCTGGTACAATTCTCTTATTCGAATAAACGACCGACCCGTTTTCCATAAACATTGGTTCAACCACGGAATTTGCAAAATTTCCCACTTATTGGACGAGAATGGCACCCTGCTTAGGTACGACGAGCTGAGGAACCAGGCATTCTTTGACGATATCAGTGAAAAACTATCTGACATTGAACGAGAATCAACAACAAAAAATATAAAACTACTCATGAACTCTAAACATTATATTAAATGTAAACAAGAAACTACTACTACTACTACTACTACTACTACTGCTGCTACTGCTACTGCTTCTGCTACTCCTACTGCTACTGCTACTGCTTCTGCTACTCCTACTACTACTGCTACTGCTACTGCTATTGCTACCCTACTACTACTGCCATTGCTAATTCACTACCACTGCCACTGCCACTGCACCCTACTACACTGCTACTGCTACCCACTACCCTGCACTGCTATTGCTTTCAATTACTACCACAAAGAAAATCTATGCTTGTTCCTGGCAGCTGGACTAGACAAAGTTAGAAGTGATGTTTCTCTTCTTGTTTGGGACATAAATGTTCAACTAAGTGTGAGAGACAGTAATCAGGAAAAGAGACATTCTGGAGTTACCGGTGGTAAACAGTCTCCCATCACTGTAGGAACAGGCTTTCAGGATCCTTCATCAATAGGAAACAGACCTCTTGCAGAACTATCAACTTCAGATCCAACTTTGTCCTTGGCATGGTCTCCTTATGATCCTAACGTATTAATTGCTGGACAGGCACAAAAGTTTCTGAGAGTGTTTGACATAAGAGACACCACACGTCCCCATATCGCAGCAGTAACAAAAGCAGTTTATGGAGTGTGTGTTGACCCTCATGTTGAACATAGAATTGCCTCATTCTCAGAGGGTCCTCCTGGTGTTATGTGTATCTGGGATGACCGAAATTTTGAAAAACCATTAATGAACATGACTCAATCGTGTCCTGTGACGGCCATTGCCTGGAGCCCAACACGATCTGGCTTACTAGCAACACTTGGTAAAGAAAGTCCTGTAGTACAGCTTTACGACATTCAACATGCTTCAGTAGCTTCTCCAGCTTATGGTGTTGGATATGAGACAGAACCTTCATTCATAGAAAGGAGTGTGAAACCATCACAGAGAGCTGTATCTTCATTCTCATGGCATCCTACTCAAGAAAATCACATGCTTACAATATCTCCATCAGGACTGGTACAAGACTTCACAATATTTGAAAGAATATCAGTTGCTTGGTCTCCAAGCTCCCATCTTACCTGGGGTTGTGGAAAGCATTTATTGGAATGTTCACAAAAGCCTGCAAAGACGCCTCTGGAGGAGGACATTTCCTTAAAAATGAAGAGAAGAGCATTTGCTGGATATGGAATTGATCATCAACAGGTACAAGACATAGCAAGAATAACATCTGATCCCAAGCTTGTTAAGTTGTGGTCATGGATTTGTCGTGTAAAGTCTATGAGGGAGCAAGATAAATCCAAAAGTCTTAAATATGATGGCATCAAGGCTATTATTGGTGGAGAGAGCAGTGCTGGAGCTGTAGTGGCAAGAAGCAAATCTGACTCTTACCAAGAGCAGCGTCTTGTAGCCCCAGTGTATTTTAGTGATGAGAGAAAGCTGGCTCTTTCTTTGTGTGGATGGGATTTTAAAAGTGCTGGAGTCCCTCTAACAGAATATCTTAAAGAGCTGCAGGCATCTGGACAGCATGAGAGAGCTGCAGCTGTAGCCTTATTCAATAACAAGATCAAGGAAGCAATTGCAATACTGAGCTCACAACAGGCAAATAAAAATATAGGAGCTAAAGGTACTACACTGAACGTGGTTGCCATGGCACTGTCAGGTTATACAGAAGAAAAGAAGACTCTCTGGAGAGATATGTGCCGGTCACTGTGTGGCCAGATGGAGAGCCCTTACCTTAGATCAGCATTCGCTTTCCTTACCACAGAAGCTGATCACTTTGACAGTATTTTGGCTGAGAAGGGAATTGAAATTGAGGACAGGGTAGCTTTTGCATGCAAATACCTTCCTGACAATAAGCTGTCTCAATTCCTAGAGAATTTGTCGACAAAGTTGAGTGACGCAGGTGACTTAGATGGCATTCTTCTAACAGGAATCTCATTAGATGGAGTTAACTTGCTAGAAAAGTATGTAAATAATACAACTGATGTCCAGACGGCCAGTCTAGTCATTGTCAATTGTGTTCCTCATATCTCCAGTGAAGTTTCAAAAGATGCAAGAGTTTCATCTTGGATAGAAAGTTATAGAAATTTGCTGGACATGTGGAGACTTTGGCACCAAAGGTCGTTGTTTGATATTCACTATAACCTGAAGGACTCCACCCAGAAACCTCCTCAACAAGTGTTTGTATCTTGTAACTTTTGTGGAAATTCCATACTCACTAACATGCTATCAACAGGTTCTAGACCAAGAATTCGTGCACAGTACTGCAATCCCTCAAATAGAACAAAGATTATGGCTTGCCCCGGGTGTCGTAAACCTCTTCCTAGATGTGCTCTCTGTCTGGTTCACATGGGAACACCTTCATCACTTTCACAGAAGCAACCAAATCAAGATCCTAGTGCAGAAAAACCAGCAAATGTAGGGAGTGTAAATACTTTTAACAACTGGTTTACATGGTGTCAATCATGTCGTCATGGGGGACATTCCAATCACGTTGTTGATTGGTTCAAGGAGCACGCTGAATGTCCTGTCACAGGGTGTGGCTGTCACTGTATGAACTTAGATTCTGTTGCTATGGCAATGCCAAACAATGACATCAATTCCTCAACTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4QNS7	GATOR2 complex protein MIOS-B OS=Xenopus laevis OX=8355 GN=mios-b PE=2 SV=1
Q8VE19	GATOR2 complex protein MIOS OS=Mus musculus OX=10090 GN=Mios PE=1 SV=2
Q5U5D4	GATOR2 complex protein MIOS-A OS=Xenopus laevis OX=8355 GN=mios-a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002871 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17034 all species →	zinc_ribbon_16	Zinc-ribbon like family	Family	Interproscan
PF21719 all species →	MIOS_a-sol	MIOS, alpha-solenoid	Repeat	Interproscan
PF21720 all species →	MIOS_WD40	MIOS, WD40 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031488 all species →	Domain	GATOR2 complex protein MIO, zinc-ribbon like domain	Interproscan
IPR049092 all species →	Domain	MIOS-like, alpha-solenoid domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR037593 all species →	Family	MIOS/Sea4	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16453 all species →	WD40 DOMAIN-CONTAINING PROTEIN MIO FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0034198 all species →	Biological Process	cellular response to amino acid starvation	Interproscan
GO:1904263 all species →	Biological Process	positive regulation of TORC1 signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20407	MIOS, MIO, SEA4; SEA/GATOR complex protein SEA4/MIOS	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.