Detailed information of evm.model.Ap7.1401 in Astrangia poculata

Genomic Location: Ap7:15158149...15166646
NR annotation: CAH3124401.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q92900Regulator of nonsense transcripts 1 OS=Homo sapiens OX=9606 GN=UPF1 PE=1 SV=2
F1RCY6Regulator of nonsense transcripts 1 OS=Danio rerio OX=7955 GN=upf1 PE=2 SV=1
Q9EPU0Regulator of nonsense transcripts 1 OS=Mus musculus OX=10090 GN=Upf1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007661 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13087
all species →		AAA_12AAA domainDomainInterproscan
PF13086
all species →		AAA_11AAA domainDomainInterproscan
PF05183
all species →		RdRPRNA dependent RNA polymeraseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007855
all species →		FamilyRNA-dependent RNA polymerase, eukaryotic-typeInterproscan
IPR041679
all species →		DomainDNA2/NAM7 helicase-like, C-terminalInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR041677
all species →		DomainDNA2/NAM7 helicase, helicase domainInterproscan
IPR047187
all species →		DomainUpf1-like, C-terminal helicase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23079
all species →		RNA-DEPENDENT RNA POLYMERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003968
all species →		Molecular FunctionRNA-dependent RNA polymerase activityInterproscan
GO:0030422
all species →		Biological ProcesssiRNA processingInterproscan
GO:0031380
all species →		Cellular Componentnuclear RNA-directed RNA polymerase complexInterproscan
GO:0004386
all species →		Molecular Functionhelicase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap7.1401.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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