Gene detail

Detailed information of evm.model.Ap7.1517 in Astrangia poculata

Genomic Location: Ap7:16185089...16212152
NR annotation: XP_020612477.1, nucleolar MIF4G domain-containing protein 1-like isoform X3 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.1517

atggcagatcctcgagggagaaagagaaatagagatcaagcagacgagtttttccatattcgagccaaaggacagtttttaaaggtgccaaaagccctagagagtgatggaaaggaagttgttacagttagaggaaagaagacaaggaaaacaccaagcagaagagatcgaagacaacaggccagagaccagaagaaagcaagaaaagttgcattctttgctagaaagaaagagcaggtttcaaaagtgtcaaacactattctaaacaaaaggcaactggagtcaaatagtaattcagcaaagaaaccctcagatgacatacttgcaaaagtagaaagaaagaaaagtaaacaaagaagagctaaggtccctaaatcacaaaaaatcttgaaacaaaatcctttggcagacaacaggaaagaagacaaagagattaagaggctggagaaacttttaaaactgggcagtaaaggaaatgttcttagtagcagattcaagatggagggtcttgactatttgctggaggtttgtgagcctcagatgataagaaatggcaaaggctactgtcatgattatgacatgtctgaatcacaaccaaaggaggagcatgacatgaattctgctggaaagaatgatgagaagggcatgagtggaaatgagaaggaagacagtgatattacagataatgatgtcaatgatgatgatgatgatgatgatgatgataatgatgatgatgacaacaatgatgatgatgatgataatgatgatgatgatgatgataatgatgatgatgataatgatgatgatgatggagacaacaatgatgatggcaaggacgaggacagtgaagaggaacaagatgaatatgagggagttttgtatgacaatgatgaaactgacataattattagttttgccaagcaggacagtaacaataaaaataatgatcacaaggataatggcaaggatccaactgggaagacacaaaaatatattccacctcatttaagaaaggacaaatcatcagcaagccagtctgaacactttaaaagaataacatctcatatgaaaggtctactaaacaggcttagtgaaggaaatatgtcagttatcagcaatgaaatagaaaatatttacactcacaacagcagaaatgatatgaacaagatacttagcaatcttattatggggtcatgtgtgtctacatcattgatgcctgaaaaacttctgatggaacataccatgctattggcaattctttcaagccatattggaagtgaagttgctgcctttttcattgaaagacttgcagagctgtttgaccatctgcacagtggtgaagaccgctgtggacaaggcaaagagtgtgttaatgtagtagccctgtttgcttatctgtacaactttaaaattattcactgttgtcttatttatgacatcattcggcggctggcaaattcatttatggaacaagacattgaactacttttactgcttctgaaaactactggggaagaaatcagaagagatgacccagcatcattaaaggacataattcttcaaattcaagcaaaagcagcttctacacctaacctgactaatgattccagagttggctttatgttggaaattattatcaatctacgcagcaataacttgaggaagataccaggctatgatccttcaaaagtagaacatctcagaaaaagtctgcgctcagttactagagagtcaggtcacaaagtcagcaatcagctgaaaatcagcttagaagagttactgatgccagagttgaaaggtcgctggtggattgtgggctctgccttaggaagacatgaaaatgaatctttaaaaatgtcttctgttcaaatggaaaactcaaagctgctggaactggcacgaaaacaacgcatgaacactgatgtcagaaagaatgtgtttctaattatgatgaccagtgaggactacattgatgcattcgaaaaattgattagattgaatttaaaagatgttcaaacccgtgaagtaatccatgttcttattgactgttgtatacaggaaaaagcatataatccatactatgcttatcttggtcagaagttctgtgaatacagccgaagctaccaggtcacttttcagtactcattctgggacaagcttaaagttgttgataacttggcgcctcacagtgttgctaacctgtcacgcctcatatctcaactcattgctacccgggcactatctctagccattctaaaggttgtaaactttgtggagctggacaaaccatctgtcaaatttttcacccatctgtttcgtcaccttctctcaggctattcaacagaaataacaagaaatgtttttgaaaggatttcttctgtaaaagagcttgcgtcccttcgccaaagccttcgaatttttattaaacattttgtcggaaaaatggcattatctgacaaggaagagagacttaatctcgtagacagtattcttggagcttcagacagcaccaaactgtag

Transcript

evm.model.Ap7.1517

GAAAGAAAGAAGATGGCAGATCCTCGAGGGAGAAAGAGAAATAGAGATCAAGCAGACGAGTTTTTCCATATTCGAGCCAAAGGACAGTTTTTAAAGGTGCCAAAAGCCCTAGAGAGTGATGGAAAGGAAGTTGTTACAGTTAGAGGAAAGAAGACAAGGAAAACACCAAGCAGAAGAGATCGAAGACAACAGGCCAGAGACCAGAAGAAAGCAAGAAAAGTTGCATTCTTTGCTAGAAAGAAAGAGCAGGTTTCAAAAGTGTCAAACACTATTCTAAACAAAAGGCAACTGGAGTCAAATAGTAATTCAGCAAAGAAACCCTCAGATGACATACTTGCAAAAGTAGAAAGAAAGAAAAGTAAACAAAGAAGAGCTAAGGTCCCTAAATCACAAAAAATCTTGAAACAAAATCCTTTGGCAGACAACAGGAAAGAAGACAAAGAGATTAAGAGGCTGGAGAAACTTTTAAAACTGGGCAGTAAAGGAAATGTTCTTAGTAGCAGATTCAAGATGGAGGGTCTTGACTATTTGCTGGAGGTTTGTGAGCCTCAGATGATAAGAAATGGCAAAGGCTACTGTCATGATTATGACATGTCTGAATCACAACCAAAGGAGGAGCATGACATGAATTCTGCTGGAAAGAATGATGAGAAGGGCATGAGTGGAAATGAGAAGGAAGACAGTGATATTACAGATAATGATGTCAATGATGATGATGATGATGATGATGATGATAATGATGATGATGACAACAATGATGATGATGATGATAATGATGATGATGATGATGATAATGATGATGATGATAATGATGATGATGATGGAGACAACAATGATGATGGCAAGGACGAGGACAGTGAAGAGGAACAAGATGAATATGAGGGAGTTTTGTATGACAATGATGAAACTGACATAATTATTAGTTTTGCCAAGCAGGACAGTAACAATAAAAATAATGATCACAAGGATAATGGCAAGGATCCAACTGGGAAGACACAAAAATATATTCCACCTCATTTAAGAAAGGACAAATCATCAGCAAGCCAGTCTGAACACTTTAAAAGAATAACATCTCATATGAAAGGTCTACTAAACAGGCTTAGTGAAGGAAATATGTCAGTTATCAGCAATGAAATAGAAAATATTTACACTCACAACAGCAGAAATGATATGAACAAGATACTTAGCAATCTTATTATGGGGTCATGTGTGTCTACATCATTGATGCCTGAAAAACTTCTGATGGAACATACCATGCTATTGGCAATTCTTTCAAGCCATATTGGAAGTGAAGTTGCTGCCTTTTTCATTGAAAGACTTGCAGAGCTGTTTGACCATCTGCACAGTGGTGAAGACCGCTGTGGACAAGGCAAAGAGTGTGTTAATGTAGTAGCCCTGTTTGCTTATCTGTACAACTTTAAAATTATTCACTGTTGTCTTATTTATGACATCATTCGGCGGCTGGCAAATTCATTTATGGAACAAGACATTGAACTACTTTTACTGCTTCTGAAAACTACTGGGGAAGAAATCAGAAGAGATGACCCAGCATCATTAAAGGACATAATTCTTCAAATTCAAGCAAAAGCAGCTTCTACACCTAACCTGACTAATGATTCCAGAGTTGGCTTTATGTTGGAAATTATTATCAATCTACGCAGCAATAACTTGAGGAAGATACCAGGCTATGATCCTTCAAAAGTAGAACATCTCAGAAAAAGTCTGCGCTCAGTTACTAGAGAGTCAGGTCACAAAGTCAGCAATCAGCTGAAAATCAGCTTAGAAGAGTTACTGATGCCAGAGTTGAAAGGTCGCTGGTGGATTGTGGGCTCTGCCTTAGGAAGACATGAAAATGAATCTTTAAAAATGTCTTCTGTTCAAATGGAAAACTCAAAGCTGCTGGAACTGGCACGAAAACAACGCATGAACACTGATGTCAGAAAGAATGTGTTTCTAATTATGATGACCAGTGAGGACTACATTGATGCATTCGAAAAATTGATTAGATTGAATTTAAAAGATGTTCAAACCCGTGAAGTAATCCATGTTCTTATTGACTGTTGTATACAGGAAAAAGCATATAATCCATACTATGCTTATCTTGGTCAGAAGTTCTGTGAATACAGCCGAAGCTACCAGGTCACTTTTCAGTACTCATTCTGGGACAAGCTTAAAGTTGTTGATAACTTGGCGCCTCACAGTGTTGCTAACCTGTCACGCCTCATATCTCAACTCATTGCTACCCGGGCACTATCTCTAGCCATTCTAAAGGTTGTAAACTTTGTGGAGCTGGACAAACCATCTGTCAAATTTTTCACCCATCTGTTTCGTCACCTTCTCTCAGGCTATTCAACAGAAATAACAAGAAATGTTTTTGAAAGGATTTCTTCTGTAAAAGAGCTTGCGTCCCTTCGCCAAAGCCTTCGAATTTTTATTAAACATTTTGTCGGAAAAATGGCATTATCTGACAAGGAAGAGAGACTTAATCTCGTAGACAGTATTCTTGGAGCTTCAGACAGCACCAAACTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5C9Z4	Nucleolar MIF4G domain-containing protein 1 OS=Homo sapiens OX=9606 GN=NOM1 PE=1 SV=1
Q3UFM5	Nucleolar MIF4G domain-containing protein 1 OS=Mus musculus OX=10090 GN=Nom1 PE=1 SV=2
Q9W020	Nucleolar MIF4G domain-containing protein 1 homolog OS=Drosophila melanogaster OX=7227 GN=CG9004 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003148 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02847 all species →	MA3	MA3 domain	Repeat	Interproscan
PF02854 all species →	MIF4G	MIF4G domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003890 all species →	Domain	MIF4G-like, type 3	Interproscan
IPR003891 all species →	Domain	Initiation factor eIF-4 gamma, MA3	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR050781 all species →	Family	Pre-mRNA-splicing factor CWC22	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18034 all species →	CELL CYCLE CONTROL PROTEIN CWF22-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0042274 all species →	Biological Process	ribosomal small subunit biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17583	NOM1; nucleolar MIF4G domain-containing protein 1	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.