Detailed information of evm.model.Ap7.1550 in Astrangia poculata

Genomic Location: Ap7:16876980...16879292
NR annotation: XP_020621171.1, homeobox protein ceh-19-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q60554Homeobox protein Nkx-6.1 OS=Mesocricetus auratus OX=10036 GN=NKX6-1 PE=1 SV=1
Q99MA9Homeobox protein Nkx-6.1 OS=Mus musculus OX=10090 GN=Nkx6-1 PE=1 SV=1
O35762Homeobox protein Nkx-6.1 OS=Rattus norvegicus OX=10116 GN=Nkx6-1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001599 (this species only)
Transcription factor familyHomeobox · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000047
all species →		Conserved_siteHelix-turn-helix motifInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR017970
all species →		Conserved_siteHomeobox, conserved siteInterproscan
IPR020479
all species →		DomainHomeobox domain, metazoaInterproscan
IPR050848
all species →		FamilyHomeobox domain-containing transcription factorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24333
all species →		HOMEO BOX HB9 LIKE A-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap7.1550.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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