Genomic Location: Ap7:17645047...17646901
NR annotation: KAJ7371366.1, hypothetical protein OS493_026483 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap7.1630 |
| Transcript |
| evm.model.Ap7.1630 |
| Protein |
| evm.model.Ap7.1630 |
| UniProt accession | Description |
|---|---|
| Q06615 | Homeobox protein notochord OS=Xenopus laevis OX=8355 GN=noto PE=2 SV=1 |
| Q91770 | Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 SV=1 |
| O43711 | T-cell leukemia homeobox protein 3 OS=Homo sapiens OX=9606 GN=TLX3 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001599 (this species only) |
| Transcription factor family | Homeobox · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00046 all species → | Homeodomain | Homeodomain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017970 all species → | Conserved_site | Homeobox, conserved site | Interproscan |
| IPR001356 all species → | Domain | Homeobox domain | Interproscan |
| IPR020479 all species → | Domain | Homeobox domain, metazoa | Interproscan |
| IPR000047 all species → | Conserved_site | Helix-turn-helix motif | Interproscan |
| IPR050848 all species → | Family | Homeobox domain-containing transcription factors | Interproscan |
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24333 all species → | HOMEO BOX HB9 LIKE A-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
evm.model.Ap7.1630.Transcript abundance of evm.model.Ap7.1630 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
