Genomic Location: Ap7:17870786...17899608
NR annotation: KAJ7386827.1, hypothetical protein OS493_006857 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap7.1652 |
| Transcript |
| evm.model.Ap7.1652 |
| Protein |
| evm.model.Ap7.1652 |
| UniProt accession | Description |
|---|---|
| Q8C761 | Cytoplasmic dynein 2 intermediate chain 1 OS=Mus musculus OX=10090 GN=Dync2i1 PE=1 SV=1 |
| Q8WVS4 | Cytoplasmic dynein 2 intermediate chain 1 OS=Homo sapiens OX=9606 GN=DYNC2I1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003649 (this species only) |
evm.model.Ap7.1652. This gene does have a gene model — the search simply returned no hit.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR042505 all species → | Family | Cytoplasmic dynein 2 intermediate chain 1 | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR16022 all species → | WD REPEAT DOMAIN 60 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005868 all species → | Cellular Component | cytoplasmic dynein complex | Interproscan |
| GO:0042073 all species → | Biological Process | intraciliary transport | Interproscan |
| GO:0045503 all species → | Molecular Function | dynein light chain binding | Interproscan |
| GO:0045504 all species → | Molecular Function | dynein heavy chain binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K22869 | WDR60; WD repeat-containing protein 60 | - | Cilium and associated proteins | ko03037 | deepkoala |
Transcript abundance of evm.model.Ap7.1652 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
