Gene detail

Detailed information of evm.model.Ap7.169 in Astrangia poculata

Genomic Location: Ap7:2156459...2168771
NR annotation: XP_022779259.1, zygotic DNA replication licensing factor mcm6-B-like [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.169

atggacgtcgctgatcgcactactggaacttcgcacgttcgcgatgacctcgcagagcgatgccaaaagttatttcaagactttctcgaagaatttcaggttgatggggaagaaaagtaccttcctgaagttcaagaacttattagacctgagcgcaacacattaactgtcagttatcaagatgtggagtcttacaatgctcagttatctaccattattcaggaggaatactacagagtatttccttatctgtgccgagctgtgagaaacttcgcaagggacagaggtcaagtacccccaacaaaggagttttatgtcagctttacagatctaccaacaagacacaagatccgagagcttactagtcagaaaattggcactttactcagaataagcggacaagttgttcggacgcaccctgtgcaccccgagctagtgactggaacatttatctgtcttgactgtcaaacagtaatcaaggatgtagaacaacaatttaaatatactcagcccacagtatgtcgcaacccagtctgtcagaacagggcaagatttatgcttgacattaacaaatcacgctatgtggattttcaaaaagtgcgtatacaggaaacacaagcagaattaccaaggggaagcattcctagaagtgtggagataattctaagagctgaagcagttgaacaagctcaagccggggacaagtgtgactttactggaacactgattgttgttcctgatgtggcacagctttctacaccaggtgcaagagctgaatcttctggcagacagacttctggtgaaggctacgaagcagagggtgtgaggggtctaaaggctcttggagtgcgagatttaacctacagacttgccttcctagcctgcagtgtacaagcaacaaaccccaggtttggaggtaaagaccttgatggtgatgatgtcacagcagaaacaattaagaaacagatgacagaccaggaatggcagaagatatatcaaatgagcaaagacaagaatctttaccagaacttgatcaatagcatcttccctacaattcatggaaatgatgaggttaaacgtggggtgcttctgatgttgttcggtggagttcccaaggtcacgatggaaaaaactaaccttagaggggatatcaatgtctgtattgttggagatcctagcacagccaagagccaaatactcaagcatatagaagagtttagtgtcagggcagtgtatacttcagggaagtcctctagtgctgcaggcctcacagcagctgtcgtcaaggatgaagagtcatccgagttcgtcattgaagctggagctttgatgttggctgacaatggagtttgttgtattgatgaatttgacaagatggatcccaaagatcaggtcgccattcatgaagctatggagcagcaaactatttcaattacaaaggctggggtgaaagcctcgctgaatgcaagaacttccattctagctgcggcaaacccaattgctggccgatatgacagaacaaaatcactaaagcacaatctcaacatgtcagctcctatcatgtcaagatttgaccttttcttcattcttgttgatgattgcaatgaggtaacagactatgcaattgcgcgaagaattgttgatctacacagcaggcttggagaagctgtggaaaggatttacagtgtggatgaggtacagaggtacataacatttgccaggcagtttaaacccacactcagtaaagatgcacaagacttcattgttgagcagtacaaacatcttcgagaaagagacgcaagtttggcaagatctgcatggcgcatcacagtgcggcagttggagagtatgatccgtctctcagagggcatggccaggctttactgccaagatgaggtacaacccaaacatgtcaaagaagcattccgtctgttaaacaagtctattatcagggtggaaactccagacgtacagtttgatgaagatgaagaggagcagcaagaagatatggaagtggatgcagaaagtgacacccacccaagtggcatggtcaatggtcacatggacacagacactaccaagacagacagtgatcagaagggtaaatccaagctgcgattgtcatttgaagattacaggtcaatggcaagaactattgcaggacatctgagggctgaggaggaccgagcgggcgaaggattcatggatgatgctggtttacgaagaagtgacattgtgaattggtatctaaaaactattgagaaagacattgaaacagaggaagagttagcagaaaagaaaattattttggataaagtactggacaggctgattacacatgataatgttattatggcattgaaggaatggggcttggctgaggaagattacgtgccaacagaggaagatgacccgtttcttgttgtccatccaaatgttgtggttgatgacctgtaa

Transcript

evm.model.Ap7.169

ATGGACGTCGCTGATCGCACTACTGGAACTTCGCACGTTCGCGATGACCTCGCAGAGCGATGCCAAAAGTTATTTCAAGACTTTCTCGAAGAATTTCAGGTTGATGGGGAAGAAAAGTACCTTCCTGAAGTTCAAGAACTTATTAGACCTGAGCGCAACACATTAACTGTCAGTTATCAAGATGTGGAGTCTTACAATGCTCAGTTATCTACCATTATTCAGGAGGAATACTACAGAGTATTTCCTTATCTGTGCCGAGCTGTGAGAAACTTCGCAAGGGACAGAGGTCAAGTACCCCCAACAAAGGAGTTTTATGTCAGCTTTACAGATCTACCAACAAGACACAAGATCCGAGAGCTTACTAGTCAGAAAATTGGCACTTTACTCAGAATAAGCGGACAAGTTGTTCGGACGCACCCTGTGCACCCCGAGCTAGTGACTGGAACATTTATCTGTCTTGACTGTCAAACAGTAATCAAGGATGTAGAACAACAATTTAAATATACTCAGCCCACAGTATGTCGCAACCCAGTCTGTCAGAACAGGGCAAGATTTATGCTTGACATTAACAAATCACGCTATGTGGATTTTCAAAAAGTGCGTATACAGGAAACACAAGCAGAATTACCAAGGGGAAGCATTCCTAGAAGTGTGGAGATAATTCTAAGAGCTGAAGCAGTTGAACAAGCTCAAGCCGGGGACAAGTGTGACTTTACTGGAACACTGATTGTTGTTCCTGATGTGGCACAGCTTTCTACACCAGGTGCAAGAGCTGAATCTTCTGGCAGACAGACTTCTGGTGAAGGCTACGAAGCAGAGGGTGTGAGGGGTCTAAAGGCTCTTGGAGTGCGAGATTTAACCTACAGACTTGCCTTCCTAGCCTGCAGTGTACAAGCAACAAACCCCAGGTTTGGAGGTAAAGACCTTGATGGTGATGATGTCACAGCAGAAACAATTAAGAAACAGATGACAGACCAGGAATGGCAGAAGATATATCAAATGAGCAAAGACAAGAATCTTTACCAGAACTTGATCAATAGCATCTTCCCTACAATTCATGGAAATGATGAGGTTAAACGTGGGGTGCTTCTGATGTTGTTCGGTGGAGTTCCCAAGGTCACGATGGAAAAAACTAACCTTAGAGGGGATATCAATGTCTGTATTGTTGGAGATCCTAGCACAGCCAAGAGCCAAATACTCAAGCATATAGAAGAGTTTAGTGTCAGGGCAGTGTATACTTCAGGGAAGTCCTCTAGTGCTGCAGGCCTCACAGCAGCTGTCGTCAAGGATGAAGAGTCATCCGAGTTCGTCATTGAAGCTGGAGCTTTGATGTTGGCTGACAATGGAGTTTGTTGTATTGATGAATTTGACAAGATGGATCCCAAAGATCAGGTCGCCATTCATGAAGCTATGGAGCAGCAAACTATTTCAATTACAAAGGCTGGGGTGAAAGCCTCGCTGAATGCAAGAACTTCCATTCTAGCTGCGGCAAACCCAATTGCTGGCCGATATGACAGAACAAAATCACTAAAGCACAATCTCAACATGTCAGCTCCTATCATGTCAAGATTTGACCTTTTCTTCATTCTTGTTGATGATTGCAATGAGGTAACAGACTATGCAATTGCGCGAAGAATTGTTGATCTACACAGCAGGCTTGGAGAAGCTGTGGAAAGGATTTACAGTGTGGATGAGGTACAGAGGTACATAACATTTGCCAGGCAGTTTAAACCCACACTCAGTAAAGATGCACAAGACTTCATTGTTGAGCAGTACAAACATCTTCGAGAAAGAGACGCAAGTTTGGCAAGATCTGCATGGCGCATCACAGTGCGGCAGTTGGAGAGTATGATCCGTCTCTCAGAGGGCATGGCCAGGCTTTACTGCCAAGATGAGGTACAACCCAAACATGTCAAAGAAGCATTCCGTCTGTTAAACAAGTCTATTATCAGGGTGGAAACTCCAGACGTACAGTTTGATGAAGATGAAGAGGAGCAGCAAGAAGATATGGAAGTGGATGCAGAAAGTGACACCCACCCAAGTGGCATGGTCAATGGTCACATGGACACAGACACTACCAAGACAGACAGTGATCAGAAGGGTAAATCCAAGCTGCGATTGTCATTTGAAGATTACAGGTCAATGGCAAGAACTATTGCAGGACATCTGAGGGCTGAGGAGGACCGAGCGGGCGAAGGATTCATGGATGATGCTGGTTTACGAAGAAGTGACATTGTGAATTGGTATCTAAAAACTATTGAGAAAGACATTGAAACAGAGGAAGAGTTAGCAGAAAAGAAAATTATTTTGGATAAAGTACTGGACAGGCTGATTACACATGATAATGTTATTATGGCATTGAAGGAATGGGGCTTGGCTGAGGAAGATTACGTGCCAACAGAGGAAGATGACCCGTTTCTTGTTGTCCATCCAAATGTTGTGGTTGATGACCTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZY18	Zygotic DNA replication licensing factor mcm6-B OS=Xenopus laevis OX=8355 GN=zmcm6-b PE=1 SV=1
Q6P1V8	Zygotic DNA replication licensing factor mcm6 OS=Xenopus tropicalis OX=8364 GN=zmcm6 PE=2 SV=1
Q14566	DNA replication licensing factor MCM6 OS=Homo sapiens OX=9606 GN=MCM6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005160 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18263 all species →	MCM6_C	MCM6 C-terminal winged-helix domain	Domain	Interproscan
PF00493 all species →	MCM	MCM P-loop domain	Domain	Interproscan
PF14551 all species →	MCM_N	MCM N-terminal domain	Domain	Interproscan
PF17855 all species →	MCM_lid	MCM AAA-lid domain	Domain	Interproscan
PF17207 all species →	MCM_OB	MCM OB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018525 all species →	Conserved_site	Mini-chromosome maintenance, conserved site	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031327 all species →	Family	Mini-chromosome maintenance protein	Interproscan
IPR001208 all species →	Domain	MCM domain	Interproscan
IPR041024 all species →	Domain	Mcm6, C-terminal winged-helix domain	Interproscan
IPR008049 all species →	Family	DNA replication licensing factor Mcm6	Interproscan
IPR027925 all species →	Domain	MCM, N-terminal domain	Interproscan
IPR041562 all species →	Domain	MCM, AAA-lid domain	Interproscan
IPR033762 all species →	Domain	MCM OB domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11630 all species →	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0000727 all species →	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006268 all species →	Biological Process	DNA unwinding involved in DNA replication	Interproscan
GO:0017116 all species →	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0042555 all species →	Cellular Component	MCM complex	Interproscan
GO:1902969 all species →	Biological Process	mitotic DNA replication	Interproscan
GO:1990518 all species →	Molecular Function	single-stranded 3'-5' DNA helicase activity	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006270 all species →	Biological Process	DNA replication initiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02542	MCM6; DNA replication licensing factor MCM6	EC:5.6.2.3	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.