Gene detail

Detailed information of evm.model.Ap7.1715 in Astrangia poculata

Genomic Location: Ap7:18275868...18278629
NR annotation: KAJ7371307.1, Superoxide dismutase [Mn], mitochondrial [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8HXP6	Superoxide dismutase [Mn], mitochondrial OS=Pongo pygmaeus OX=9600 GN=SOD2 PE=2 SV=3
Q8HXP3	Superoxide dismutase [Mn], mitochondrial OS=Macaca fascicularis OX=9541 GN=SOD2 PE=2 SV=3
P07895	Superoxide dismutase [Mn], mitochondrial OS=Rattus norvegicus OX=10116 GN=Sod2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001942 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02777 all species →	Sod_Fe_C	Iron/manganese superoxide dismutases, C-terminal domain	Domain	Interproscan
PF00081 all species →	Sod_Fe_N	Iron/manganese superoxide dismutases, alpha-hairpin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036314 all species →	Homologous_superfamily	Manganese/iron superoxide dismutase, C-terminal domain superfamily	Interproscan
IPR001189 all species →	Family	Manganese/iron superoxide dismutase	Interproscan
IPR050265 all species →	Family	Iron/Manganese Superoxide Dismutase	Interproscan
IPR036324 all species →	Homologous_superfamily	Manganese/iron superoxide dismutase, N-terminal domain superfamily	Interproscan
IPR019833 all species →	Binding_site	Manganese/iron superoxide dismutase, binding site	Interproscan
IPR019832 all species →	Domain	Manganese/iron superoxide dismutase, C-terminal	Interproscan
IPR019831 all species →	Domain	Manganese/iron superoxide dismutase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11404 all species →	SUPEROXIDE DISMUTASE 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004784 all species →	Molecular Function	superoxide dismutase activity	Interproscan
GO:0006801 all species →	Biological Process	superoxide metabolic process	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04564	SOD2; superoxide dismutase, Fe-Mn family	EC:1.15.1.1	Lipid and atherosclerosis	ko05417	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.