Gene detail

Detailed information of evm.model.Ap7.1808 in Astrangia poculata

Genomic Location: Ap7:19426948...19435017
NR annotation: CAH3186482.1, unnamed protein product, partial [Porites lobata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6F3J0	Nuclear factor NF-kappa-B p105 subunit OS=Canis lupus familiaris OX=9615 GN=NFKB1 PE=2 SV=2
P25799	Nuclear factor NF-kappa-B p105 subunit OS=Mus musculus OX=10090 GN=Nfkb1 PE=1 SV=2
Q63369	Nuclear factor NF-kappa-B p105 subunit OS=Rattus norvegicus OX=10116 GN=Nfkb1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000740 (this species only)
Transcription factor family	RHD · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16179 all species →	RHD_dimer	Rel homology dimerisation domain	Domain	Interproscan
PF00554 all species →	RHD_DNA_bind	Rel homology DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR032397 all species →	Domain	Rel homology dimerisation domain	Interproscan
IPR011539 all species →	Domain	Rel homology domain, DNA-binding domain	Interproscan
IPR002909 all species →	Domain	IPT domain	Interproscan
IPR033926 all species →	Domain	NFkappaB IPT domain	Interproscan
IPR000451 all species →	Family	NF-kappa-B/Dorsal	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR037059 all species →	Homologous_superfamily	Rel homology domain (RHD), DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24169 all species →	NUCLEAR FACTOR NF-KAPPA-B PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap7.1808.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.