Gene detail

Detailed information of evm.model.Ap7.1869 in Astrangia poculata

Genomic Location: Ap7:19921928...19969587
NR annotation: XP_020601368.1, uncharacterized protein LOC110040477 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.1869

atggcgtcaagtccaataaattatatgtctgacatattctggaagcgctggttaaaggaatacttgccaaccctacaagaaagagctaagtggatcaaacctcgccactgcttgccgatcggagacctggtacaaccagttccaaatgattattttgaagaaccagcaaatgttataattggtccaataattcacattttgtgctctgaggaagttacgcttaaaaagcctgtctcaatttggataccaagtacattacaaaaaagcacgattggagtaccggatctgtcgtcaagcagtatcaggacattttaccgtagcacagaggacaactcagaagaatgggttgaaaaaacagaagaattgaagccaaaactagagaatgggcttgtaacattccaagtcagtcacttctcgatgtttatgcacgtgattggtcttttacgccgttttgccgacattggaaatcgtctcggaaacgctttatctgcgccacaacatgcaggatttttagcttgcctgtgtaatacgacaactcgtgaagaatatcaactgactctatgctgtttcccactacacatgagaagtacagtacatagggctgtaactacagaacgtgacgttattctcgtgggtgacgatacatcacgcagttcacttttcagaggggacgaggcgttcttttctctaccagggtcaattattttaagtagacaacgaagaaacaacatggaaatcacctcagtcagatttcttggaaatgactcgtttcaaacttccttcccagtacgttttgaagaaactgcaagttctacggaaatcatatttttcaaaaatatgacaaacgaaaacaatctgctgtgtactgtgtatctgctgtctccaccacaacttcagcaggtttctcacagatcacgccagtcatcaattttggcatcttctgcatgtcaagagtttgcagaactcttggagcagcgaccagatttattaacgtcacagcaaatcttacaaatacaggacgacgtaggaaactgctggcttgaacttggaatcaaacttaatattgaaccagaatcaagtgttcacaatctagggcaagattacagtttcatcagagatagggctcgtgtggtcttggaaatgtggtcgaatcagatagggaatgacgctacggtgggacgtcttgcatgcgcccttattagtatacgacaaagacggattgcagataagctgcttgctttggacgcccatggccaggacgatggaaaccgacatggaaatggcgaaagacagggcgatgacgatgtgcatgaaactgcctatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcgatggcaatggacgtggcgatagcgaagaacatggcaaagaacaagacaatagcgaaggacatggacgcggctttggcgatgacaaaagacgtgaagatagcgatggcgatggcaaaggaagtggcgatagcgaagaacatggcaaagaacaaggcgatagcgaaggacatggatgcggtgttggcgatgaaaaaggatgtggcgatggcgatggcgatggcgaaagacgtggcggtgacgaaggacatgttaatgacgatggacgtgcagatggcgaaggaaatggatgtcagtttataaaaacgtttgactacaacttcgattttgacaggaatggcgtcatttattactttggggagactggggaacaaagttggagcaatccagccgacgctggcggtactttggccgtagaacgttcgactaatttctgtggagaggctaaggagctggtagagtattttcacccaataccaagtagcaccgctagagacctgaacagagacagacagccatggtggggcattgatttaagtaaaacatacaccttacgtttgaaagcttacactttacgacatgggagcgaagacaaggattgcctactcaccaactggacaattgaagggaaacgcgaaggaaagctttcaacagataatgattggataacactgagaacacataaaaacgaaaagtggttaaagccaaaaccgaagttaaagtcccgtcaatctaaattcataacaaaaacttggcacattaatgattctaaggaacctttccgttttttcaggattgttcaattaaaaaaaaactgtaagatttacctagcaggtatggagctctatggtgatctttacaaaaacacgtaa

Transcript

evm.model.Ap7.1869

ATGGCGTCAAGTCCAATAAATTATATGTCTGACATATTCTGGAAGCGCTGGTTAAAGGAATACTTGCCAACCCTACAAGAAAGAGCTAAGTGGATCAAACCTCGCCACTGCTTGCCGATCGGAGACCTGGTACAACCAGTTCCAAATGATTATTTTGAAGAACCAGCAAATGTTATAATTGGTCCAATAATTCACATTTTGTGCTCTGAGGAAGTTACGCTTAAAAAGCCTGTCTCAATTTGGATACCAAGTACATTACAAAAAAGCACGATTGGAGTACCGGATCTGTCGTCAAGCAGTATCAGGACATTTTACCGTAGCACAGAGGACAACTCAGAAGAATGGGTTGAAAAAACAGAAGAATTGAAGCCAAAACTAGAGAATGGGCTTGTAACATTCCAAGTCAGTCACTTCTCGATGTTTATGCACGTGATTGGTCTTTTACGCCGTTTTGCCGACATTGGAAATCGTCTCGGAAACGCTTTATCTGCGCCACAACATGCAGGATTTTTAGCTTGCCTGTGTAATACGACAACTCGTGAAGAATATCAACTGACTCTATGCTGTTTCCCACTACACATGAGAAGTACAGTACATAGGGCTGTAACTACAGAACGTGACGTTATTCTCGTGGGTGACGATACATCACGCAGTTCACTTTTCAGAGGGGACGAGGCGTTCTTTTCTCTACCAGGGTCAATTATTTTAAGTAGACAACGAAGAAACAACATGGAAATCACCTCAGTCAGATTTCTTGGAAATGACTCGTTTCAAACTTCCTTCCCAGTACGTTTTGAAGAAACTGCAAGTTCTACGGAAATCATATTTTTCAAAAATATGACAAACGAAAACAATCTGCTGTGTACTGTGTATCTGCTGTCTCCACCACAACTTCAGCAGGTTTCTCACAGATCACGCCAGTCATCAATTTTGGCATCTTCTGCATGTCAAGAGTTTGCAGAACTCTTGGAGCAGCGACCAGATTTATTAACGTCACAGCAAATCTTACAAATACAGGACGACGTAGGAAACTGCTGGCTTGAACTTGGAATCAAACTTAATATTGAACCAGAATCAAGTGTTCACAATCTAGGGCAAGATTACAGTTTCATCAGAGATAGGGCTCGTGTGGTCTTGGAAATGTGGTCGAATCAGATAGGGAATGACGCTACGGTGGGACGTCTTGCATGCGCCCTTATTAGTATACGACAAAGACGGATTGCAGATAAGCTGCTTGCTTTGGACGCCCATGGCCAGGACGATGGAAACCGACATGGAAATGGCGAAAGACAGGGCGATGACGATGTGCATGAAACTGCCTATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCAATGGACGTGGCGATAGCGAAGAACATGGCAAAGAACAAGACAATAGCGAAGGACATGGACGCGGCTTTGGCGATGACAAAAGACGTGAAGATAGCGATGGCGATGGCAAAGGAAGTGGCGATAGCGAAGAACATGGCAAAGAACAAGGCGATAGCGAAGGACATGGATGCGGTGTTGGCGATGAAAAAGGATGTGGCGATGGCGATGGCGATGGCGAAAGACGTGGCGGTGACGAAGGACATGTTAATGACGATGGACGTGCAGATGGCGAAGGAAATGGATGTCAGTTTATAAAAACGTTTGACTACAACTTCGATTTTGACAGGAATGGCGTCATTTATTACTTTGGGGAGACTGGGGAACAAAGTTGGAGCAATCCAGCCGACGCTGGCGGTACTTTGGCCGTAGAACGTTCGACTAATTTCTGTGGAGAGGCTAAGGAGCTGGTAGAGTATTTTCACCCAATACCAAGTAGCACCGCTAGAGACCTGAACAGAGACAGACAGCCATGGTGGGGCATTGATTTAAGTAAAACATACACCTTACGTTTGAAAGCTTACACTTTACGACATGGGAGCGAAGACAAGGATTGCCTACTCACCAACTGGACAATTGAAGGGAAACGCGAAGGAAAGCTTTCAACAGATAATGATTGGATAACACTGAGAACACATAAAAACGAAAAGTGGTTAAAGCCAAAACCGAAGTTAAAGTCCCGTCAATCTAAATTCATAACAAAAACTTGGCACATTAATGATTCTAAGGAACCTTTCCGTTTTTTCAGGATTGTTCAATTAAAAAAAAACTGTAAGATTTACCTAGCAGGTATGGAGCTCTATGGTGATCTTTACAAAAACACGTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000763 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF18701 all species →	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR040676 all species →	Domain	Domain of unknown function DUF5641	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47457 all species →	OS05G0345500 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap7.1869.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.