Detailed information of evm.model.Ap7.187 in Astrangia poculata

Genomic Location: Ap7:2418614...2431592
NR annotation: CAH3130936.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A5D8W1Cilia- and flagella-associated protein 69 OS=Homo sapiens OX=9606 GN=CFAP69 PE=1 SV=3
B0CM26Cilia- and flagella-associated protein 69 OS=Papio anubis OX=9555 GN=CFAP69 PE=3 SV=1
B0VXE6Cilia- and flagella-associated protein 69 OS=Callithrix jacchus OX=9483 GN=CFAP69 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004506 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21049
all species →
CFA69_ARM_rptCilia- and flagella-associated protein 69, ARM repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011989
all species →
Homologous_superfamilyArmadillo-like helicalInterproscan
IPR048733
all species →
DomainCilia- and flagella-associated protein 69, ARM repeats domainInterproscan
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan
IPR048732
all species →
FamilyCilia- and flagella-associated protein 69Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14716
all species →
CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 69Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0097225
all species →
Cellular Componentsperm midpieceInterproscan
GO:0097730
all species →
Cellular Componentnon-motile ciliumInterproscan
GO:1902093
all species →
Biological Processpositive regulation of flagellated sperm motilityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap7.187.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap7.187 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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