Gene detail

Detailed information of evm.model.Ap7.190 in Astrangia poculata

Genomic Location: Ap7:2438417...2453378
NR annotation: XP_020623084.1, helicase POLQ-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.190

atgaatactgtcaaaagggaagcgtattccctgccaacgaacgaccagaaacggcgacgcgaaggtgcaccatctgtgaaaaaggtcaacttcagacgcaatagcaactgcgtgttgacagcagaagcagaccatgcaaaaggcaacgaaaatcagaaaacctctggtttgaaagtaaaaagaagtaggaggtcaaaacgaaggagttcgctaagcagctgtagcgaaagtgaagcgggtggcgatggaaaaaatcgcgaatcctcgaaacatggcaaacagcccaatgaaaaattatgcgagaagtctttgactggtgtggttgtttcagagcaaaagacctactgtagtactcctgtcagaagagtaaatgacataccagattgtgttgcccacgtttcggctagtattcaggttgagcaggcgtttgaacgacaaaactcgccctttggagctggaataagaagtatagtggagaactccagcttttttggcgacgatagtgctttagctgacttaaatctaagtgaaatcattacttcatcagctgcatccgttcctgctcaacgtgataattgtactagttctatgaaagaagaatcaagtcagttttatggtttgccacttcaagtcaaagagctgatacagaagtacaaaggaatagaaagtttgtatgagtggcagacagactgcctaaatttgtcagctatcaaggagagaagaaacttgatttactctcttccaacaagtggaggcaaaacattggtcgcagaaattcttatcttcaaagagcttctgctacaagaaaaggatgtcttgtttatccttccatttgtgtccattgtacaggaaaaggttaaatctttgactcaatttgctgtcgagctgggcttcttagtagaggagtatgctgctagccgaggacaaattccaccacgcaacagacgcaagaagaaatctgtgtatattgcaacaatagaaaaggcaaatgcactggttaacagcctcattggagaaaacagaatttcaacattgggactcgtggtggtagatgagctgcatatgttaggagaagcaggaaggggtgctacattagagatgtgtttggccaagctcatgtttgtctcttcaactactcagataattggaatgagtgccactttaagcaacattgcagacttaaagacatttttaaaggctgaagtgtattcaaatgatttcagaccggttgaactgaaggaatttgtgaaagtgggtcatgatatttacaaagttcctaaaccaacagatcccgaggaagaatctggcagagttgtcaggagaattaataacaagccgggccaaaacaaagaactgctgatgcgggatccagatcagttattagcactggttttggaggttattccacagcactcctgcctagttttttgttctaccaagaagaactgtcaaaccttggcattactgctcgtcaattttatgcccagagaattgtgtcaagtgaaagccatggagagacatcagctaatgaaggcgctgtacaatgaagcttgtggcctttgccctgtgttaaaacagaccattccttttggcattgcgtaccatcacagtgggctgacaatggacgagcgcaagcttattgaagatggctacagtcagggcgtgctttgccttctgacttgtacttctactttggcagcgggggttaatttaccggcaaagagggtcattatccgtgcaccgtatgtgggaagatctgtactcagtaagagtcagtacaaacagatgatcggcagagcaggacgagccgggattgatacatcaggagagagtattcttattatcaaagatgctgacaagccgaagatccagcacctgttttcaggccccttggagagctgttgcagtagtttgttgattgacaacggcaaaggtttacgagcgatgctcctcacacttattggactaaaactttgtacgacaagtgaagaacttaaacagtttatgcagaacacattactggccgtgcaatcggagtcgcagtcagtagacatcattgaacagatggaggcatcgctagactctctgcagaagctgggacatgttaatatttctggccctactgagagcagaaagatagaagtcacacaccttggacaggctacctttaaagggtgcattgatgtcgatagcagtcccatgatctacagcgagcttgcaagagcgcaagagaaccttgttctggctaatgaactgcatctgctctatctggtgacaccgctggactcgagggattcgattgagcctgagtggatgacttactacagacaggtgtcagcattacgcgagtcagagcagaaagtagctgatctgttgggtgcaacagaagggtttttatccatgagagcaactggacagcgaagcaaaaaggacagcagtgtggaagctacagtaaggcggttctatttgactctcatcctgtacaagttgttaaaggagaacacagtttgggatgtagcgggagtgtttaacgtgacacgaggatttgtgcagaatctattgacttcagcttcttcattcgcttcgtgcatggtgcactttactggggaactgcacgagttctggggcgtgaatctgttactagaagccatggtgaaaaaactgtcctacacggcaagcttggagcttgttcctctaatggaggtccctggtgttaaacaggctcgtgcgcgccagttactcaaagcaggctataaaagccttagcagcctggcctgggctgatgccaattcactagtgacgcagattgaacacctttcaaggcgccaggctcatcagatagtttccgctgccaagatgcttttggaagagaaagctgatgctttgagggaagaagctgaagagatgacaactgcgcctgaactacacacatcacaacaaacagaaaattaa

Transcript

evm.model.Ap7.190

ATGAATACTGTCAAAAGGGAAGCGTATTCCCTGCCAACGAACGACCAGAAACGGCGACGCGAAGGTGCACCATCTGTGAAAAAGGTCAACTTCAGACGCAATAGCAACTGCGTGTTGACAGCAGAAGCAGACCATGCAAAAGGCAACGAAAATCAGAAAACCTCTGGTTTGAAAGTAAAAAGAAGTAGGAGGTCAAAACGAAGGAGTTCGCTAAGCAGCTGTAGCGAAAGTGAAGCGGGTGGCGATGGAAAAAATCGCGAATCCTCGAAACATGGCAAACAGCCCAATGAAAAATTATGCGAGAAGTCTTTGACTGGTGTGGTTGTTTCAGAGCAAAAGACCTACTGTAGTACTCCTGTCAGAAGAGTAAATGACATACCAGATTGTGTTGCCCACGTTTCGGCTAGTATTCAGGTTGAGCAGGCGTTTGAACGACAAAACTCGCCCTTTGGAGCTGGAATAAGAAGTATAGTGGAGAACTCCAGCTTTTTTGGCGACGATAGTGCTTTAGCTGACTTAAATCTAAGTGAAATCATTACTTCATCAGCTGCATCCGTTCCTGCTCAACGTGATAATTGTACTAGTTCTATGAAAGAAGAATCAAGTCAGTTTTATGGTTTGCCACTTCAAGTCAAAGAGCTGATACAGAAGTACAAAGGAATAGAAAGTTTGTATGAGTGGCAGACAGACTGCCTAAATTTGTCAGCTATCAAGGAGAGAAGAAACTTGATTTACTCTCTTCCAACAAGTGGAGGCAAAACATTGGTCGCAGAAATTCTTATCTTCAAAGAGCTTCTGCTACAAGAAAAGGATGTCTTGTTTATCCTTCCATTTGTGTCCATTGTACAGGAAAAGGTTAAATCTTTGACTCAATTTGCTGTCGAGCTGGGCTTCTTAGTAGAGGAGTATGCTGCTAGCCGAGGACAAATTCCACCACGCAACAGACGCAAGAAGAAATCTGTGTATATTGCAACAATAGAAAAGGCAAATGCACTGGTTAACAGCCTCATTGGAGAAAACAGAATTTCAACATTGGGACTCGTGGTGGTAGATGAGCTGCATATGTTAGGAGAAGCAGGAAGGGGTGCTACATTAGAGATGTGTTTGGCCAAGCTCATGTTTGTCTCTTCAACTACTCAGATAATTGGAATGAGTGCCACTTTAAGCAACATTGCAGACTTAAAGACATTTTTAAAGGCTGAAGTGTATTCAAATGATTTCAGACCGGTTGAACTGAAGGAATTTGTGAAAGTGGGTCATGATATTTACAAAGTTCCTAAACCAACAGATCCCGAGGAAGAATCTGGCAGAGTTGTCAGGAGAATTAATAACAAGCCGGGCCAAAACAAAGAACTGCTGATGCGGGATCCAGATCAGTTATTAGCACTGGTTTTGGAGGTTATTCCACAGCACTCCTGCCTAGTTTTTTGTTCTACCAAGAAGAACTGTCAAACCTTGGCATTACTGCTCGTCAATTTTATGCCCAGAGAATTGTGTCAAGTGAAAGCCATGGAGAGACATCAGCTAATGAAGGCGCTGTACAATGAAGCTTGTGGCCTTTGCCCTGTGTTAAAACAGACCATTCCTTTTGGCATTGCGTACCATCACAGTGGGCTGACAATGGACGAGCGCAAGCTTATTGAAGATGGCTACAGTCAGGGCGTGCTTTGCCTTCTGACTTGTACTTCTACTTTGGCAGCGGGGGTTAATTTACCGGCAAAGAGGGTCATTATCCGTGCACCGTATGTGGGAAGATCTGTACTCAGTAAGAGTCAGTACAAACAGATGATCGGCAGAGCAGGACGAGCCGGGATTGATACATCAGGAGAGAGTATTCTTATTATCAAAGATGCTGACAAGCCGAAGATCCAGCACCTGTTTTCAGGCCCCTTGGAGAGCTGTTGCAGTAGTTTGTTGATTGACAACGGCAAAGGTTTACGAGCGATGCTCCTCACACTTATTGGACTAAAACTTTGTACGACAAGTGAAGAACTTAAACAGTTTATGCAGAACACATTACTGGCCGTGCAATCGGAGTCGCAGTCAGTAGACATCATTGAACAGATGGAGGCATCGCTAGACTCTCTGCAGAAGCTGGGACATGTTAATATTTCTGGCCCTACTGAGAGCAGAAAGATAGAAGTCACACACCTTGGACAGGCTACCTTTAAAGGGTGCATTGATGTCGATAGCAGTCCCATGATCTACAGCGAGCTTGCAAGAGCGCAAGAGAACCTTGTTCTGGCTAATGAACTGCATCTGCTCTATCTGGTGACACCGCTGGACTCGAGGGATTCGATTGAGCCTGAGTGGATGACTTACTACAGACAGGTGTCAGCATTACGCGAGTCAGAGCAGAAAGTAGCTGATCTGTTGGGTGCAACAGAAGGGTTTTTATCCATGAGAGCAACTGGACAGCGAAGCAAAAAGGACAGCAGTGTGGAAGCTACAGTAAGGCGGTTCTATTTGACTCTCATCCTGTACAAGTTGTTAAAGGAGAACACAGTTTGGGATGTAGCGGGAGTGTTTAACGTGACACGAGGATTTGTGCAGAATCTATTGACTTCAGCTTCTTCATTCGCTTCGTGCATGGTGCACTTTACTGGGGAACTGCACGAGTTCTGGGGCGTGAATCTGTTACTAGAAGCCATGGTGAAAAAACTGTCCTACACGGCAAGCTTGGAGCTTGTTCCTCTAATGGAGGTCCCTGGTGTTAAACAGGCTCGTGCGCGCCAGTTACTCAAAGCAGGCTATAAAAGCCTTAGCAGCCTGGCCTGGGCTGATGCCAATTCACTAGTGACGCAGATTGAACACCTTTCAAGGCGCCAGGCTCATCAGATAGTTTCCGCTGCCAAGATGCTTTTGGAAGAGAAAGCTGATGCTTTGAGGGAAGAAGCTGAAGAGATGACAACTGCGCCTGAACTACACACATCACAACAAACAGAAAATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2VPA6	Helicase POLQ-like OS=Mus musculus OX=10090 GN=Helq PE=1 SV=2
Q8TDG4	Helicase POLQ-like OS=Homo sapiens OX=9606 GN=HELQ PE=1 SV=2
Q9VSE2	Helicase POLQ-like OS=Drosophila melanogaster OX=7227 GN=mus301 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002976 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF21099 all species →	POLQ_helical	DNA_pol_Q helicase like region helical domain	Domain	Interproscan
PF20470 all species →	HTH_61	Helix-turn-helix domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050474 all species →	Family	Helicase Hel308/SKI2	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR048960 all species →	Domain	POLQ-like, helical domain	Interproscan
IPR046931 all species →	Domain	DNA polymerase theta-like, helix-turn-helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47961 all species →	DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap7.190.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.