Gene detail

Detailed information of evm.model.Ap7.2006 in Astrangia poculata

Genomic Location: Ap7:21186226...21196736
NR annotation: CAH3156029.1, unnamed protein product, partial [Porites evermanni]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.2006

atgggttgtacagccagcaaaagtaacatcataatttcaagtagcttcggagaggaagggaagaaagagaccagtgatgagggtggcttgcttatcggtcatacggatgtcttatcgcggacggaggaacacggcggagggcaaattgaggccccaagcccaacagaagttctcccagacatcatggatccgaggctggtgcagaagacagttcgaatatttctgagttcaactttcacggacacgcgagtagatagaaacaggcttatggaggacgtgtttgaaccaatcagagatctttgtcaacagcacggcatagcgtttgaagtcgtggacttacgctggggtgtgcgccaggaatctgtcgatgatcatcgggttgtgaatatctgcatggaagaaataaaacgctgccaggagacttctcttggtatcgccttcatcgccatattgggagacaaatacggttggagaccgctgcccccatcagtcaatgcggacgagtttgaatcacttctccaattcattgaccaatcagatcgcgagctcatcactgcttggtatctccgcgacgacaactctgttccgccatgttacctacttcaaccaatttcgacccagtttcccatcaaatcgacggaaaaagacgaggtcgacaaggcttgggaggactggggtaaagtcgagaagagtatttggagtcagctacggtcagcagcagagaaggccggtctggaggagaaggacaagcaaaagtacaccgtgtcggtcactcagagcgaggtagaaactggcgtcgtggcggatccagaggcaagccagcgtactcttgttattgatcgcaggtttgatcgcattaatgaaaaggataaggcggccagaaatttcgttaacttacaggaagatggagacattgacccggaatgtgtaaagttgatgtcagagttaaaagaacatcgaattccggcctcactggaagttggacgagtacttaagtttactgacctgcggtggcatcacgaaggactgcaaggcgaggaacacgagcaatatattacagaaatgtgcaatagagtcaaagaacttctgacatctcgaataaatgaaatcttgaaaagcctcggtccaccaaatccattgatggaggaggtcacgcgtcacgcactcttctgtcgtgaccacacccactcgttccagggccgcgcagatattttgcaagctatccacaattacgttagtggccccgatcccacgatgcctttagtgattcatggagaatctggagttggtaagacgtcactgatggcaaaggttgtcatgaagatacaagaaaagtacaaggaaagaaatctggccataatgtatcggttctgtggaactacaccggattcgtccactggtcgagccctaaccgagagtttctgcaaacaactcaaacttgtgtataacatcacggacgaagttcccgaggactacaaaacgttatgcgaggtttttcctgcattcatggcgcacgcttcggaagaaaggccgctgtgcatagtgatcgactctctggatcagttgactgacgaggacggcgcaaggcgcttcttggaatggcttccacgcaagctccccgcgcatgcgtgcgtaatagtgtctaccctgccagtggagggtgggtgcatgcagcgtttaaaaacgtttggaattccagctgcacagtttttacaggttacgcggctcgacatgcatgatggacctgctatcctagatgcttggctaaaatcagtcaacagaacgctgatccctgatcagcgggcccttattttagaggcttttaaccgctgcccactgcccctgtacttgcacttgctgtttaacaaatgccgcgcttggccttcattcaagaaaaccgctgacatcattcttcaacctgacgtcaccggaatgatacactctctgtaccaggaccttgaaaagtatcacggtgaaatgttcgtgggaagagtcctgggcttgctggccgcagggactgatgggatgaattcagacgacatccttaatcttttgagttgtgacgaggaacttttacaggacgtgcttgtctggcatcagccacctaaacgacgcttgccaccgctactgctagctcgtcttaagcacgaccttgggcctttcttagtggagaggggtgcgtacggtgtgtcattgctggcgctctaccacaggcaattcttagaagtagcaagagaaagatatttcaagggtgatcgtcgcaaagaaactcacagcaacattgctaagtacttctccggggagtatcaggaaaaatatggaaatgaacgcgccattcctgcccaaccccacgcctactcagcggtcgcgcttaaccttagaaaactggaccggcttccagtggctcttttagaggcacacgactttaatggtctgcgaagtactctgggagatttgaagtttgtacaggcaaagtgcatggcgggaatgggatatgagctactggccgagactactaaggcagtgggttgttctgtcagtgaagacgctgatcccgaggtcaccaaagatcttcaagatattttgggatttctacgcagtgaggtgcatatcttgagcgggtctccgatcctgacataccaacaagccgccacctacccacagcatgagtggatggcaaaagaagcagagcggctgcgtcaaacctttgatcaacctgacccaaacaatatccctgccccagagggatgggtggaatgggtgaacaagcccgaggtccccgaagccttcgagcttgagctcagtggtcactctaagagcgtactctccacgtgctttgcgaaggacaacaagacgttgttgtccggatcagcagatgggacaatccgagtttgggacagtcaaaccggggagctgcatgcccagcttgaagatcatcagggacctgtcacgtgtgtccggctgtcaccagatggtgctatgatggcatctgcctctgcggacaagactattcggttgtggaaatttccagacaatgaagctattagagtgctcgaagatcacaaagatcgcgtaacgtgcatcgccttcttcaaaaatggggacaaattgctttcgtcttctaaagacaagaccctcaaaatctgggatctaaacagtggtcagagcctggcaacacttctgggacataaaagtttccctatatcttgtgccttgtcgccgctggatgactcagttggtgcctcgtgcggagataatctggaactcttcatatgggaccttaacgaacgctccatcagactgaccttggagggacatcagcgagacgataacccaaatttccctgataaagacacccttgagggcctacgagatctggactacaaatccctgatttggtcagtgtgcttctctcccgatggaaaatacctcgcttccgcatgcgtcgacagtgacgttttcttatgggacgttaaaagtggtgcgaagatttggacgtttaatctccccaacgacgcatccacggtggcctttgctcaaactgaacatggaacgcgtttggctgctggctcttcggctcatcacactgtcaccctctttgacgcaacctttgatgatgtcggtggtgaacgcgtcagtagtagttccaggaccctggctttactcggcggtcactccgactgggtgatcgatgtggcatttaatgaagacgcgagtcgattggcgtctgcagcttgtgacaaaaccgtgcgggtgtgggacgcaactgctgcggaaaaactgcgagaggcacgtttccattctgaacgttgctggagcgtggcgtattctgacgatgggaaatggctggcttctgcctcagatgactttaaggttaggaacaatctatga

Transcript

evm.model.Ap7.2006

ATGGGTTGTACAGCCAGCAAAAGTAACATCATAATTTCAAGTAGCTTCGGAGAGGAAGGGAAGAAAGAGACCAGTGATGAGGGTGGCTTGCTTATCGGTCATACGGATGTCTTATCGCGGACGGAGGAACACGGCGGAGGGCAAATTGAGGCCCCAAGCCCAACAGAAGTTCTCCCAGACATCATGGATCCGAGGCTGGTGCAGAAGACAGTTCGAATATTTCTGAGTTCAACTTTCACGGACACGCGAGTAGATAGAAACAGGCTTATGGAGGACGTGTTTGAACCAATCAGAGATCTTTGTCAACAGCACGGCATAGCGTTTGAAGTCGTGGACTTACGCTGGGGTGTGCGCCAGGAATCTGTCGATGATCATCGGGTTGTGAATATCTGCATGGAAGAAATAAAACGCTGCCAGGAGACTTCTCTTGGTATCGCCTTCATCGCCATATTGGGAGACAAATACGGTTGGAGACCGCTGCCCCCATCAGTCAATGCGGACGAGTTTGAATCACTTCTCCAATTCATTGACCAATCAGATCGCGAGCTCATCACTGCTTGGTATCTCCGCGACGACAACTCTGTTCCGCCATGTTACCTACTTCAACCAATTTCGACCCAGTTTCCCATCAAATCGACGGAAAAAGACGAGGTCGACAAGGCTTGGGAGGACTGGGGTAAAGTCGAGAAGAGTATTTGGAGTCAGCTACGGTCAGCAGCAGAGAAGGCCGGTCTGGAGGAGAAGGACAAGCAAAAGTACACCGTGTCGGTCACTCAGAGCGAGGTAGAAACTGGCGTCGTGGCGGATCCAGAGGCAAGCCAGCGTACTCTTGTTATTGATCGCAGGTTTGATCGCATTAATGAAAAGGATAAGGCGGCCAGAAATTTCGTTAACTTACAGGAAGATGGAGACATTGACCCGGAATGTGTAAAGTTGATGTCAGAGTTAAAAGAACATCGAATTCCGGCCTCACTGGAAGTTGGACGAGTACTTAAGTTTACTGACCTGCGGTGGCATCACGAAGGACTGCAAGGCGAGGAACACGAGCAATATATTACAGAAATGTGCAATAGAGTCAAAGAACTTCTGACATCTCGAATAAATGAAATCTTGAAAAGCCTCGGTCCACCAAATCCATTGATGGAGGAGGTCACGCGTCACGCACTCTTCTGTCGTGACCACACCCACTCGTTCCAGGGCCGCGCAGATATTTTGCAAGCTATCCACAATTACGTTAGTGGCCCCGATCCCACGATGCCTTTAGTGATTCATGGAGAATCTGGAGTTGGTAAGACGTCACTGATGGCAAAGGTTGTCATGAAGATACAAGAAAAGTACAAGGAAAGAAATCTGGCCATAATGTATCGGTTCTGTGGAACTACACCGGATTCGTCCACTGGTCGAGCCCTAACCGAGAGTTTCTGCAAACAACTCAAACTTGTGTATAACATCACGGACGAAGTTCCCGAGGACTACAAAACGTTATGCGAGGTTTTTCCTGCATTCATGGCGCACGCTTCGGAAGAAAGGCCGCTGTGCATAGTGATCGACTCTCTGGATCAGTTGACTGACGAGGACGGCGCAAGGCGCTTCTTGGAATGGCTTCCACGCAAGCTCCCCGCGCATGCGTGCGTAATAGTGTCTACCCTGCCAGTGGAGGGTGGGTGCATGCAGCGTTTAAAAACGTTTGGAATTCCAGCTGCACAGTTTTTACAGGTTACGCGGCTCGACATGCATGATGGACCTGCTATCCTAGATGCTTGGCTAAAATCAGTCAACAGAACGCTGATCCCTGATCAGCGGGCCCTTATTTTAGAGGCTTTTAACCGCTGCCCACTGCCCCTGTACTTGCACTTGCTGTTTAACAAATGCCGCGCTTGGCCTTCATTCAAGAAAACCGCTGACATCATTCTTCAACCTGACGTCACCGGAATGATACACTCTCTGTACCAGGACCTTGAAAAGTATCACGGTGAAATGTTCGTGGGAAGAGTCCTGGGCTTGCTGGCCGCAGGGACTGATGGGATGAATTCAGACGACATCCTTAATCTTTTGAGTTGTGACGAGGAACTTTTACAGGACGTGCTTGTCTGGCATCAGCCACCTAAACGACGCTTGCCACCGCTACTGCTAGCTCGTCTTAAGCACGACCTTGGGCCTTTCTTAGTGGAGAGGGGTGCGTACGGTGTGTCATTGCTGGCGCTCTACCACAGGCAATTCTTAGAAGTAGCAAGAGAAAGATATTTCAAGGGTGATCGTCGCAAAGAAACTCACAGCAACATTGCTAAGTACTTCTCCGGGGAGTATCAGGAAAAATATGGAAATGAACGCGCCATTCCTGCCCAACCCCACGCCTACTCAGCGGTCGCGCTTAACCTTAGAAAACTGGACCGGCTTCCAGTGGCTCTTTTAGAGGCACACGACTTTAATGGTCTGCGAAGTACTCTGGGAGATTTGAAGTTTGTACAGGCAAAGTGCATGGCGGGAATGGGATATGAGCTACTGGCCGAGACTACTAAGGCAGTGGGTTGTTCTGTCAGTGAAGACGCTGATCCCGAGGTCACCAAAGATCTTCAAGATATTTTGGGATTTCTACGCAGTGAGGTGCATATCTTGAGCGGGTCTCCGATCCTGACATACCAACAAGCCGCCACCTACCCACAGCATGAGTGGATGGCAAAAGAAGCAGAGCGGCTGCGTCAAACCTTTGATCAACCTGACCCAAACAATATCCCTGCCCCAGAGGGATGGGTGGAATGGGTGAACAAGCCCGAGGTCCCCGAAGCCTTCGAGCTTGAGCTCAGTGGTCACTCTAAGAGCGTACTCTCCACGTGCTTTGCGAAGGACAACAAGACGTTGTTGTCCGGATCAGCAGATGGGACAATCCGAGTTTGGGACAGTCAAACCGGGGAGCTGCATGCCCAGCTTGAAGATCATCAGGGACCTGTCACGTGTGTCCGGCTGTCACCAGATGGTGCTATGATGGCATCTGCCTCTGCGGACAAGACTATTCGGTTGTGGAAATTTCCAGACAATGAAGCTATTAGAGTGCTCGAAGATCACAAAGATCGCGTAACGTGCATCGCCTTCTTCAAAAATGGGGACAAATTGCTTTCGTCTTCTAAAGACAAGACCCTCAAAATCTGGGATCTAAACAGTGGTCAGAGCCTGGCAACACTTCTGGGACATAAAAGTTTCCCTATATCTTGTGCCTTGTCGCCGCTGGATGACTCAGTTGGTGCCTCGTGCGGAGATAATCTGGAACTCTTCATATGGGACCTTAACGAACGCTCCATCAGACTGACCTTGGAGGGACATCAGCGAGACGATAACCCAAATTTCCCTGATAAAGACACCCTTGAGGGCCTACGAGATCTGGACTACAAATCCCTGATTTGGTCAGTGTGCTTCTCTCCCGATGGAAAATACCTCGCTTCCGCATGCGTCGACAGTGACGTTTTCTTATGGGACGTTAAAAGTGGTGCGAAGATTTGGACGTTTAATCTCCCCAACGACGCATCCACGGTGGCCTTTGCTCAAACTGAACATGGAACGCGTTTGGCTGCTGGCTCTTCGGCTCATCACACTGTCACCCTCTTTGACGCAACCTTTGATGATGTCGGTGGTGAACGCGTCAGTAGTAGTTCCAGGACCCTGGCTTTACTCGGCGGTCACTCCGACTGGGTGATCGATGTGGCATTTAATGAAGACGCGAGTCGATTGGCGTCTGCAGCTTGTGACAAAACCGTGCGGGTGTGGGACGCAACTGCTGCGGAAAAACTGCGAGAGGCACGTTTCCATTCTGAACGTTGCTGGAGCGTGGCGTATTCTGACGATGGGAAATGGCTGGCTTCTGCCTCAGATGACTTTAAGGTTAGGAACAATCTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q149M9	NACHT domain- and WD repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=NWD1 PE=1 SV=3
A6H603	NACHT domain- and WD repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Nwd1 PE=2 SV=2
Q9ULI1	NACHT and WD repeat domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NWD2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004487 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan
PF13271 all species →	DUF4062	Domain of unknown function (DUF4062)	Family	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR025139 all species →	Domain	Domain of unknown function DUF4062	Interproscan
IPR052752 all species →	Family	NACHT and WD repeat domain-containing protein	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19871 all species →	BETA TRANSDUCIN-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap7.2006.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.