Gene detail

Detailed information of evm.model.Ap7.2092 in Astrangia poculata

Genomic Location: Ap7:22070824...22089675
NR annotation: XP_027055791.1, ATP-dependent RNA helicase DDX42-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.2092

atgtttaacaagggaggcccaggcaagcagcgaggctttggttttggtggatttgcattggcagccaagaaagaggatcctgtaccaaaaaatatagggagaggaattcctttgtcaaagccagttggaaatattaagaaaaatcaaccctcccagaaaggtgtttcatcatttccgctaccaggagccagaaaaccaatctttgtagatagtgataatgaagatgatgagacaaaatttgttgacgatgatgatgaagatgatgacagcatgcctgcaaatcggcaaacaggagatgatgatgacgaggaagatgagttggataaattcatggcaggaattgagcatgaagttcaaaaggaaacagcaatgtctgagaaggaaaaaagtgaaaaagacaagaaaaagataagaagagatgatattgaagaggaggatgatcatgaatcgtatttcaactacgtgaagaatgcacctgtagttgcttatcctgatgatgaggaagaaatcgagtacgacagtgacggcaatcctattgctccagagaaatcaaagatcattgtgcctcttccagcagtggatcactttgagattgactacccaacatttgagaaaaacttctactttgaacacaaagaaatagccaggcttacagaacacgaggttcaggacttgaggaaaaagttagggatgaaggtgtcaggtgctctgccttcaagaccgtccatcagttttgcacattttggttttgacgagcagctaatgggtgcaatcaggaagtcagactacacacagccaacccctatacagtgtcaggccatccctattgcactcagtggtcgagatatcatcggcattgctaagacaggctctggtaagacggcagccttcttgtggccagcgctggtccacataatggaccaaccagagcttgagcctggtgatgggcctattgcacttatctgtgctcctacaagagaactttgccagcagatctttgcggaggcacggcggtttggaagagtttacaacatacatgctgtagctgtgtttggaggcggtaacaagtatgagcagtccaaagcacttcaagagggagcagaaattgttgttgcaactccaggtcgactgattgatcacataaagggaaaaggaacaaatcttcaaagagtaacatatctggtgtttgatgaagctgacagaatgtttgacatgggatttgagccgcaagtgagatcaatagcaaacaatgttcgtcctgacagacaaactttgctgttcagtgccacgttcaagaagaaagtcgagatgctttgtcgggatattttgacagatcctatcagagtagtagtgggtgaacttggtgaggcaaacgaagatgtgacgcagattgtggagattctgccaagtgtctctgataaatggacgtggttgacaagacatctagtctctttcacatcagctggcagcgtacttatcttcgtaacgaaaaaagcaaacagtgaagaactcgcagcaaaactgaaaaccaaagattttgaagtggttttactgcatggagacatggatcagtttgagagaaacaaagtcatcaacgcattcaagaagcaagagattgctatcttagtagccaccgatgtggcagcacgtggtttggacatcccgtcaatcaaaactgttataaactatgacgtggcacgtgacattcacacgcacacgcataggattggtcgaactggaagagccggggaaaagggtgcagcctacacccttctcacgtctgcggatcagaacttttcaggagatctggtgcgaaatttggaaggggcaaatcaagctgtccctgaagctctgatggacatggctatgaagaacgcctggttccgaaagtctcgtttccgacacggcaaaggaaaagccagcggtagggaaggacgaccacgcatgcgtgaaaggcccggcctgggaatgcacggatcttcggatacccaggtcggtgatggcagaggtgcacagtattcctacccagattcatcttatccacaatcgtcttccgtatcttcttcttcctcaaagtcttcatctcgaccggcatcgtcctcgtcgtctggtggagtattcggttcttcagcaagaaatgatcgaacgtcagctctgaaagctgctttccaggcgcagtacaagtctcacttctgtgccgccgcctcctccacgtctaacacgtgggacgcgagtagtcatcacagcactgctaaacctcctgacagacctaaagcgccaaaaccacctgtcaagaaatcccgctgggacccagcctag

Transcript

evm.model.Ap7.2092

ATGTTTAACAAGGGAGGCCCAGGCAAGCAGCGAGGCTTTGGTTTTGGTGGATTTGCATTGGCAGCCAAGAAAGAGGATCCTGTACCAAAAAATATAGGGAGAGGAATTCCTTTGTCAAAGCCAGTTGGAAATATTAAGAAAAATCAACCCTCCCAGAAAGGTGTTTCATCATTTCCGCTACCAGGAGCCAGAAAACCAATCTTTGTAGATAGTGATAATGAAGATGATGAGACAAAATTTGTTGACGATGATGATGAAGATGATGACAGCATGCCTGCAAATCGGCAAACAGGAGATGATGATGACGAGGAAGATGAGTTGGATAAATTCATGGCAGGAATTGAGCATGAAGTTCAAAAGGAAACAGCAATGTCTGAGAAGGAAAAAAGTGAAAAAGACAAGAAAAAGATAAGAAGAGATGATATTGAAGAGGAGGATGATCATGAATCGTATTTCAACTACGTGAAGAATGCACCTGTAGTTGCTTATCCTGATGATGAGGAAGAAATCGAGTACGACAGTGACGGCAATCCTATTGCTCCAGAGAAATCAAAGATCATTGTGCCTCTTCCAGCAGTGGATCACTTTGAGATTGACTACCCAACATTTGAGAAAAACTTCTACTTTGAACACAAAGAAATAGCCAGGCTTACAGAACACGAGGTTCAGGACTTGAGGAAAAAGTTAGGGATGAAGGTGTCAGGTGCTCTGCCTTCAAGACCGTCCATCAGTTTTGCACATTTTGGTTTTGACGAGCAGCTAATGGGTGCAATCAGGAAGTCAGACTACACACAGCCAACCCCTATACAGTGTCAGGCCATCCCTATTGCACTCAGTGGTCGAGATATCATCGGCATTGCTAAGACAGGCTCTGGTAAGACGGCAGCCTTCTTGTGGCCAGCGCTGGTCCACATAATGGACCAACCAGAGCTTGAGCCTGGTGATGGGCCTATTGCACTTATCTGTGCTCCTACAAGAGAACTTTGCCAGCAGATCTTTGCGGAGGCACGGCGGTTTGGAAGAGTTTACAACATACATGCTGTAGCTGTGTTTGGAGGCGGTAACAAGTATGAGCAGTCCAAAGCACTTCAAGAGGGAGCAGAAATTGTTGTTGCAACTCCAGGTCGACTGATTGATCACATAAAGGGAAAAGGAACAAATCTTCAAAGAGTAACATATCTGGTGTTTGATGAAGCTGACAGAATGTTTGACATGGGATTTGAGCCGCAAGTGAGATCAATAGCAAACAATGTTCGTCCTGACAGACAAACTTTGCTGTTCAGTGCCACGTTCAAGAAGAAAGTCGAGATGCTTTGTCGGGATATTTTGACAGATCCTATCAGAGTAGTAGTGGGTGAACTTGGTGAGGCAAACGAAGATGTGACGCAGATTGTGGAGATTCTGCCAAGTGTCTCTGATAAATGGACGTGGTTGACAAGACATCTAGTCTCTTTCACATCAGCTGGCAGCGTACTTATCTTCGTAACGAAAAAAGCAAACAGTGAAGAACTCGCAGCAAAACTGAAAACCAAAGATTTTGAAGTGGTTTTACTGCATGGAGACATGGATCAGTTTGAGAGAAACAAAGTCATCAACGCATTCAAGAAGCAAGAGATTGCTATCTTAGTAGCCACCGATGTGGCAGCACGTGGTTTGGACATCCCGTCAATCAAAACTGTTATAAACTATGACGTGGCACGTGACATTCACACGCACACGCATAGGATTGGTCGAACTGGAAGAGCCGGGGAAAAGGGTGCAGCCTACACCCTTCTCACGTCTGCGGATCAGAACTTTTCAGGAGATCTGGTGCGAAATTTGGAAGGGGCAAATCAAGCTGTCCCTGAAGCTCTGATGGACATGGCTATGAAGAACGCCTGGTTCCGAAAGTCTCGTTTCCGACACGGCAAAGGAAAAGCCAGCGGTAGGGAAGGACGACCACGCATGCGTGAAAGGCCCGGCCTGGGAATGCACGGATCTTCGGATACCCAGGTCGGTGATGGCAGAGGTGCACAGTATTCCTACCCAGATTCATCTTATCCACAATCGTCTTCCGTATCTTCTTCTTCCTCAAAGTCTTCATCTCGACCGGCATCGTCCTCGTCGTCTGGTGGAGTATTCGGTTCTTCAGCAAGAAATGATCGAACGTCAGCTCTGAAAGCTGCTTTCCAGGCGCAGTACAAGTCTCACTTCTGTGCCGCCGCCTCCTCCACGTCTAACACGTGGGACGCGAGTAGTCATCACAGCACTGCTAAACCTCCTGACAGACCTAAAGCGCCAAAACCACCTGTCAAGAAATCCCGCTGGGACCCAGCCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q810A7	ATP-dependent RNA helicase DDX42 OS=Mus musculus OX=10090 GN=Ddx42 PE=1 SV=3
Q86XP3	ATP-dependent RNA helicase DDX42 OS=Homo sapiens OX=9606 GN=DDX42 PE=1 SV=1
Q5R7D1	ATP-dependent RNA helicase DDX42 OS=Pongo abelii OX=9601 GN=DDX42 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005917 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12835	DDX42, SF3B125; ATP-dependent RNA helicase DDX42	EC:5.6.2.7	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.