Detailed information of evm.model.Ap7.2101 in Astrangia poculata

Genomic Location: Ap7:22186973...22191700
NR annotation: XP_020620933.1, small glutamine-rich tetratricopeptide repeat-containing protein alpha-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8VD33Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus OX=10090 GN=Sgtb PE=1 SV=1
Q80W98Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus OX=10116 GN=Sgtb PE=1 SV=1
O43765Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Homo sapiens OX=9606 GN=SGTA PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007056 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13414
all species →		TPR_11TPR repeatRepeatInterproscan
PF16546
all species →		SGTA_dimerHomodimerisation domain of SGTADomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047150
all species →		FamilySGTInterproscan
IPR019734
all species →		RepeatTetratricopeptide repeatInterproscan
IPR032374
all species →		DomainSGTA, homodimerisation domainInterproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45831
all species →		LD24721PInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006620
all species →		Biological Processpost-translational protein targeting to endoplasmic reticulum membraneInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0060090
all species →		Molecular Functionmolecular adaptor activityInterproscan
GO:0072380
all species →		Cellular ComponentTRC complexInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap7.2101.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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