Gene detail

Detailed information of evm.model.Ap7.2115 in Astrangia poculata

Genomic Location: Ap7:22398062...22404520
NR annotation: XP_035668943.1, 52 kDa repressor of the inhibitor of the protein kinase-like [Branchiostoma floridae]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.2115

atgggcaagcacattattctgaagggtatactgaacgatttaaatgctgcaccttactactctattttagccgatgaggtaacgtcccacaacgaagagcatcttgctatctgtgcccggttcgttgacgaaaagaaagatgttagagaggagttcttaacatttattaagctggaaaggataactggtgagaagattgcagagagcatccttgcgtttctcaaagagaacaatataccagcaacaaacatgcgtggccaaggatacgacggtgcaagcaacatgtcatctagcacagtaggcgtacaagcacggatcaagaaggagaccccgttagccacgtacgttcactgcaatggacactgcctcaacctcgtgatcagtaagtcgtgtgctttacctcaggtgcgtaatgtcctagaccgcctgaaaaattgctgtcgcttctttcttaaaagccctaagagaagtggtcttcttgagctcattgtcaagcacaacgttgttaacgaaacaaagagaaaacctctgttggatctgtgcaagacaagatgggcagaacggcacactgcttatcagcatttctaccaagcttttgttttcattgcagaagctctcgaaatgattggattcaaacgtcaccttgataagtatggtgacatgtatgccgactgggacccagcaaaccgtaatgaagcccaacaaattttggcaagtattacgtcctttgagttcattgtcgtgtttatggcagtgtaccaatatttgtcgcacctggctggaatcacggttaagctacagagagcagctcttgacatcgtggaggcccatggcatgatcacagaagttgctagtttctacagaaaacaaagggaagattgtgacaaaaccttttcagctgtttacactcaaagtgttgcaatggcagaaaaggtgggcactgctgccgaaatgcctcgaattacgtcgagacaacagcatcgttccaataccgaggctcaaaatcctaaaatttatttccaacgaaacgtggcaattcctctccttgatcacatcatcatgtgcatcaatgagcagttttcaccttcggcgaccgttgccgcgtcactgcttggtctcgtaccaagtgttctctgttcaaagaatgttaatcttgaagcagctgttaacaagtacaatgatgatctcccctcccctgaaatgtttgaaatggagcttatgcgatggagaggtcgaaacctggcgatggaaccggaattaaggccagcttcacctgcagtggcaatcaaagattgtgatgatgacctctttccaaacatcagcattcttctaaaaattgcctgcaccataccagtaacatcatgcgaatgtgaacgaagtgcaagcacgttgcgacgactgaataactacatgcgagcgtcaatgggaaaagaaaggcgtctgaggctttctcacccgtatgccagcgcctttgcgacatcgccgtgggtgccccttccgctgtttctcatctaccgcctgattgctgccttctacttcttgtcgtggttgatttacagcggctttagcgatggtaactactggttcatatacctaagcaactgggtcttcacctttgtaaccgcccacttcatgctcgccatgttcatcaccacccattactgttgcggggctggtgtcgaagacgacccagccgggtacggaccgcgtcgtttcaagtcggaaacctacatcgtgggactctcttcggaggacgacggcgatgataatgaagaccaagggacgtcctatgccaaggcagaggatgacaacgcgctgagctggccgcagaaaacattatggttgttcttcaccatagccagtgtcacgaccgtggtcgtcactattgcttactggtcaatgatttactccggtgtggagatcgatggtctggccgtgaatcaacacattttgagcaccgtgtttatgctgattgaagtgataatgagtaatattcccatccgtctcttgcatttcatctattcccatgttttctcgtcaatctacgtgcttgtcaccgtgatctactggggcgcaggaggcttgaatgaagaaggagagaactacatttacaaagttcttaattacgaagagcatgcaggccacgccatctttacagttttctttttcctgatcatcttgcagtttttggtacacatgtttctttttatcttgttcagattcagagcatggcttgtttccaaatgtcagtga

Transcript

evm.model.Ap7.2115

ATGGGCAAGCACATTATTCTGAAGGGTATACTGAACGATTTAAATGCTGCACCTTACTACTCTATTTTAGCCGATGAGGTAACGTCCCACAACGAAGAGCATCTTGCTATCTGTGCCCGGTTCGTTGACGAAAAGAAAGATGTTAGAGAGGAGTTCTTAACATTTATTAAGCTGGAAAGGATAACTGGTGAGAAGATTGCAGAGAGCATCCTTGCGTTTCTCAAAGAGAACAATATACCAGCAACAAACATGCGTGGCCAAGGATACGACGGTGCAAGCAACATGTCATCTAGCACAGTAGGCGTACAAGCACGGATCAAGAAGGAGACCCCGTTAGCCACGTACGTTCACTGCAATGGACACTGCCTCAACCTCGTGATCAGTAAGTCGTGTGCTTTACCTCAGGTGCGTAATGTCCTAGACCGCCTGAAAAATTGCTGTCGCTTCTTTCTTAAAAGCCCTAAGAGAAGTGGTCTTCTTGAGCTCATTGTCAAGCACAACGTTGTTAACGAAACAAAGAGAAAACCTCTGTTGGATCTGTGCAAGACAAGATGGGCAGAACGGCACACTGCTTATCAGCATTTCTACCAAGCTTTTGTTTTCATTGCAGAAGCTCTCGAAATGATTGGATTCAAACGTCACCTTGATAAGTATGGTGACATGTATGCCGACTGGGACCCAGCAAACCGTAATGAAGCCCAACAAATTTTGGCAAGTATTACGTCCTTTGAGTTCATTGTCGTGTTTATGGCAGTGTACCAATATTTGTCGCACCTGGCTGGAATCACGGTTAAGCTACAGAGAGCAGCTCTTGACATCGTGGAGGCCCATGGCATGATCACAGAAGTTGCTAGTTTCTACAGAAAACAAAGGGAAGATTGTGACAAAACCTTTTCAGCTGTTTACACTCAAAGTGTTGCAATGGCAGAAAAGGTGGGCACTGCTGCCGAAATGCCTCGAATTACGTCGAGACAACAGCATCGTTCCAATACCGAGGCTCAAAATCCTAAAATTTATTTCCAACGAAACGTGGCAATTCCTCTCCTTGATCACATCATCATGTGCATCAATGAGCAGTTTTCACCTTCGGCGACCGTTGCCGCGTCACTGCTTGGTCTCGTACCAAGTGTTCTCTGTTCAAAGAATGTTAATCTTGAAGCAGCTGTTAACAAGTACAATGATGATCTCCCCTCCCCTGAAATGTTTGAAATGGAGCTTATGCGATGGAGAGGTCGAAACCTGGCGATGGAACCGGAATTAAGGCCAGCTTCACCTGCAGTGGCAATCAAAGATTGTGATGATGACCTCTTTCCAAACATCAGCATTCTTCTAAAAATTGCCTGCACCATACCAGTAACATCATGCGAATGTGAACGAAGTGCAAGCACGTTGCGACGACTGAATAACTACATGCGAGCGTCAATGGGAAAAGAAAGGCGTCTGAGGCTTTCTCACCCGTATGCCAGCGCCTTTGCGACATCGCCGTGGGTGCCCCTTCCGCTGTTTCTCATCTACCGCCTGATTGCTGCCTTCTACTTCTTGTCGTGGTTGATTTACAGCGGCTTTAGCGATGGTAACTACTGGTTCATATACCTAAGCAACTGGGTCTTCACCTTTGTAACCGCCCACTTCATGCTCGCCATGTTCATCACCACCCATTACTGTTGCGGGGCTGGTGTCGAAGACGACCCAGCCGGGTACGGACCGCGTCGTTTCAAGTCGGAAACCTACATCGTGGGACTCTCTTCGGAGGACGACGGCGATGATAATGAAGACCAAGGGACGTCCTATGCCAAGGCAGAGGATGACAACGCGCTGAGCTGGCCGCAGAAAACATTATGGTTGTTCTTCACCATAGCCAGTGTCACGACCGTGGTCGTCACTATTGCTTACTGGTCAATGATTTACTCCGGTGTGGAGATCGATGGTCTGGCCGTGAATCAACACATTTTGAGCACCGTGTTTATGCTGATTGAAGTGATAATGAGTAATATTCCCATCCGTCTCTTGCATTTCATCTATTCCCATGTTTTCTCGTCAATCTACGTGCTTGTCACCGTGATCTACTGGGGCGCAGGAGGCTTGAATGAAGAAGGAGAGAACTACATTTACAAAGTTCTTAATTACGAAGAGCATGCAGGCCACGCCATCTTTACAGTTTTCTTTTTCCTGATCATCTTGCAGTTTTTGGTACACATGTTTCTTTTTATCTTGTTCAGATTCAGAGCATGGCTTGTTTCCAAATGTCAGTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000033 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF21534 all species →	Rost	Protein rolling stone	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR049352 all species →	Family	Rolling stone	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR052958 all species →	Family	Interferon-induced PKR regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46289 all species →	52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02154	ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.