Genomic Location: Ap7:22698813...22715794
NR annotation: CAH3154633.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap7.2155 |
| Transcript |
| evm.model.Ap7.2155 |
| Protein |
| evm.model.Ap7.2155 |
| UniProt accession | Description |
|---|---|
| P15882 | N-chimaerin OS=Homo sapiens OX=9606 GN=CHN1 PE=1 SV=3 |
| Q91V57 | N-chimaerin OS=Mus musculus OX=10090 GN=Chn1 PE=1 SV=2 |
| P52757 | Beta-chimaerin OS=Homo sapiens OX=9606 GN=CHN2 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004109 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00130 all species → | C1_1 | Phorbol esters/diacylglycerol binding domain (C1 domain) | Domain | Interproscan |
| PF00017 all species → | SH2 | SH2 domain | Domain | Interproscan |
| PF00620 all species → | RhoGAP | RhoGAP domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002219 all species → | Domain | Protein kinase C-like, phorbol ester/diacylglycerol-binding domain | Interproscan |
| IPR000980 all species → | Domain | SH2 domain | Interproscan |
| IPR008936 all species → | Homologous_superfamily | Rho GTPase activation protein | Interproscan |
| IPR051854 all species → | Family | Rho-type GTPase-activating protein | Interproscan |
| IPR036860 all species → | Homologous_superfamily | SH2 domain superfamily | Interproscan |
| IPR000198 all species → | Domain | Rho GTPase-activating protein domain | Interproscan |
| IPR020454 all species → | Domain | Diacylglycerol/phorbol-ester binding | Interproscan |
| IPR046349 all species → | Homologous_superfamily | C1-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46075 all species → | CHIMERIN FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005096 all species → | Molecular Function | GTPase activator activity | Interproscan |
| GO:0043087 all species → | Biological Process | regulation of GTPase activity | Interproscan |
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K20630 | CHN1_2, ARHGAP2_3; chimaerin | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of evm.model.Ap7.2155 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
