Detailed information of evm.model.Ap7.2160 in Astrangia poculata

Genomic Location: Ap7:22788952...22797730
NR annotation: XP_020620901.1, LIM and SH3 domain protein 1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5R5W0LIM and SH3 domain protein 1 OS=Pongo abelii OX=9601 GN=LASP1 PE=2 SV=1
Q14847LIM and SH3 domain protein 1 OS=Homo sapiens OX=9606 GN=LASP1 PE=1 SV=2
Q3B7M5LIM and SH3 domain protein 1 OS=Bos taurus OX=9913 GN=LASP1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004978 (this species only)
Ubiquitin familyUBD|Other|SH3 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00018
all species →		SH3_1SH3 domainDomainInterproscan
PF00412
all species →		LIMLIM domainDomainInterproscan
PF00880
all species →		NebulinNebulin repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001781
all species →		DomainZinc finger, LIM-typeInterproscan
IPR001452
all species →		DomainSH3 domainInterproscan
IPR000900
all species →		RepeatNebulin repeatInterproscan
IPR036028
all species →		Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR051759
all species →		FamilyLIM and SH3 domain-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46218
all species →		LASPInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005925
all species →		Cellular Componentfocal adhesionInterproscan
GO:0051015
all species →		Molecular Functionactin filament bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24420LASP1; LIM and SH3 domain protein 1-Domain-containing proteins not elsewhere classifiedko04990deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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