Gene detail

Detailed information of evm.model.Ap7.225 in Astrangia poculata

Genomic Location: Ap7:2908400...2940616
NR annotation: CAH3130880.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.225

atgagcttgggttgttttactcgagctctacacggtttaagaatggcggttccgaaaaaagtcgccattattggctctggaaactggggctctgtgatttctcgtatagtcggtgccaatgtgaaagatcatccagatttattcgaagaagaagtgcaaatgtacgtttatgaagaactggtagaaggaaagaaactcacagacattatcaacacagaacacgagaatgtcagatacctgaaaggttttaagctcccggaaaacatcaaagcaaacgcagatccaagtgcggctgcaaaggatgcagatattttggtgtttgtcgtacctcatcagtttgtgaagactgtttgtttaaagatgaaagatgtagtgaagcctaatgtgattgcaatttcactcataaagtttggtattccatgtaaattcatgagaattgatgcagttgctgatgagactcacattttgacttggaaacagtgccgaaagaatagcatagaccgaactgcaatgcttaaacggcaggccagcatcagggcaagtgaccttaatactcgtcagtatatcttggggcctgtttacatgatgggaggtcttgatcatgccagcactggtttacatcttgtttcaaacatgatcaaagaatctctgggaattcctgaaatcagtgttctcatgggagctaatcttgctaaagaagtcgccagagaaatgtttggagaggctaccataggttgtcgatctgaagagcacggtcccatcctaaaggacttgtttcacacagattttttcaaagtgaatgttgtctcagatgcagatactttgaactctgtgatcactgaagttgcagtgggagctggagtggtagatgctttgggttatggggacaactcaaaggctgctgtcattcgcattggactgaaggagatgattgcgttcgccaatcgattctatgacgatgtcaaattggagacattctttgaatcctgcggagtggctgacttaatcaccacttgttacggtggaagaaacaggatcgctggagaggaatttgttaaaggaaagacattcgaagaagttgaaatgtacatcctgggaggacagaagctgcagggaccacatacagtctatgaagtttatcatcttctaaaggaaaatgacttgttggatgaatcccagttaccgtggactgttcccaccctcccacccaggcacagtcaaactgagatgcttgagccatcatacggtacagggacaaccactaaaactagtctaacaacttttcgcaaagatggcggacaagatactgccagtgttggaagcagtgctagtgagaaaggtcctggatcaggaagaaactctcctgtggtcagagataagaagctgttcaaaagcacgggagtcaagaaagaggttggctcacttgggtcacaaatgtttgctaacaaacttcggaagactggaaaggaatttggagcttttgaaaaacacacaaaaggatttggaatgaaaatgcttcaacagatgggttatgaaccaggcaaaggtctgggtaaggaaggacagggcattgtgtttccagtggaagcttacaagcgtgaaggccgtggagcattgggtagttatggtccagagagaaccaagaaagctcaagagttacgacctaattatgacgaagaagaagaggaggaagaaaaatttaaagaacaacttcaacagtggaagaaaacagatgagggatattcaaaaccaaagtatgtttacaaaactgcagatgaagtcaaggcttctggaggaaccaaaaagggaccatccatatctctgaagcacagcaaaataaaggttgtcgacatgactggaccagaaacaaagatcctaacaggttatggctccattgcccagcagcatgccaagccaggagaagtccctccaaccactttagctcgagatgcagaggcgtcgttttccatgccagaattgacatacaacttaaatctcctgattgatatggcagagacagacataattcaaacagacagacaattaaaatatgagcgagatcttgtggttaaccttaaacatgaagaagagaagctcactacagtgttagaacgagaagaaaaagacatcaaaagattgatggaagtcatcaatatgattgatagctgtcgacaacagtcactgtcaccagatgatgatgcccttactcttgataagtgtgaacaaatttttaatactttgcaagaagactactatgaggaattcaagatgtacgacttggcatccctagcagaacctcttgttttctctttgctgaggaatcattttcaaggctggaatcctcttcttaatccttctcatggattggaggtgatggttagatggcaggaaatactacaaaggaaagaagctgaaaactctgcattcaccctgacactgaaccaaggactggcacatggagaggaaaaaatgaagatgtatgaccgacttgtgtgggaagtctggatgccattccttcgatctgcaatgtgtacatggaactgtcgcaactatgatggcatgacaaacttgattaacacctgggccccagtcttccctccgtggatcacagaaaacatcaaacagcagctagttctacctcgtctgcaggctgaagtagatgcatggaatccattaacagactgtgttcctgtccatgcatggatccatccttggcttcctctcatgggtgaccaacttgagcccctgtatgcaccaatcaggttcaagttagcgtcggccctcaccaactggcacccctcggacccttctgcaaagatgatcctagaaccctggaccaaggttttttccaaaggtacaatggatgccttcattcttcgttctatttaccccaagctgtcacagtgcttggctgagttcatcataaacccccatcagcaacacttagaaccttttcattgggtcatggagtggaaggacataataacacaacagcatttcatcagtttgctggagaaacatttctttccacgttggattcaggttcttcgtggctggctgagtgtgagtccgaattatgatgaagtcatccaatggtattcaggctggaagggcatgtttagcgaggatctactcaacaatccaagtgtcaaagttcagttcaaccgagcgcttgacgtcatgaatcaggctgtgacgtcaccaggtggcctgctacagccgggtgctaaggagaacatagcttatctgaccagcactgaaagaaggagagaagccgaggcagcagccatggcagcggcagttgaaaaacaaaaggctgaagcagctcgacaagtggcggcctctcagaacgttccttccaattttaaagacctcatacaaaacttggctgaagagaacaatcttttattcatgccaattcctaaccgacgtttcgacggcaaagctttatactcgctgggtaaagtgacgctgtatatcgacagaggagttgtgttcgctcacacacaaggcgtgtggaaacccgtatcgttacaagacctaatggctatggcaaagtga

Transcript

evm.model.Ap7.225

ATGAGCTTGGGTTGTTTTACTCGAGCTCTACACGGTTTAAGAATGGCGGTTCCGAAAAAAGTCGCCATTATTGGCTCTGGAAACTGGGGCTCTGTGATTTCTCGTATAGTCGGTGCCAATGTGAAAGATCATCCAGATTTATTCGAAGAAGAAGTGCAAATGTACGTTTATGAAGAACTGGTAGAAGGAAAGAAACTCACAGACATTATCAACACAGAACACGAGAATGTCAGATACCTGAAAGGTTTTAAGCTCCCGGAAAACATCAAAGCAAACGCAGATCCAAGTGCGGCTGCAAAGGATGCAGATATTTTGGTGTTTGTCGTACCTCATCAGTTTGTGAAGACTGTTTGTTTAAAGATGAAAGATGTAGTGAAGCCTAATGTGATTGCAATTTCACTCATAAAGTTTGGTATTCCATGTAAATTCATGAGAATTGATGCAGTTGCTGATGAGACTCACATTTTGACTTGGAAACAGTGCCGAAAGAATAGCATAGACCGAACTGCAATGCTTAAACGGCAGGCCAGCATCAGGGCAAGTGACCTTAATACTCGTCAGTATATCTTGGGGCCTGTTTACATGATGGGAGGTCTTGATCATGCCAGCACTGGTTTACATCTTGTTTCAAACATGATCAAAGAATCTCTGGGAATTCCTGAAATCAGTGTTCTCATGGGAGCTAATCTTGCTAAAGAAGTCGCCAGAGAAATGTTTGGAGAGGCTACCATAGGTTGTCGATCTGAAGAGCACGGTCCCATCCTAAAGGACTTGTTTCACACAGATTTTTTCAAAGTGAATGTTGTCTCAGATGCAGATACTTTGAACTCTGTGATCACTGAAGTTGCAGTGGGAGCTGGAGTGGTAGATGCTTTGGGTTATGGGGACAACTCAAAGGCTGCTGTCATTCGCATTGGACTGAAGGAGATGATTGCGTTCGCCAATCGATTCTATGACGATGTCAAATTGGAGACATTCTTTGAATCCTGCGGAGTGGCTGACTTAATCACCACTTGTTACGGTGGAAGAAACAGGATCGCTGGAGAGGAATTTGTTAAAGGAAAGACATTCGAAGAAGTTGAAATGTACATCCTGGGAGGACAGAAGCTGCAGGGACCACATACAGTCTATGAAGTTTATCATCTTCTAAAGGAAAATGACTTGTTGGATGAATCCCAGTTACCGTGGACTGTTCCCACCCTCCCACCCAGGCACAGTCAAACTGAGATGCTTGAGCCATCATACGGTACAGGGACAACCACTAAAACTAGTCTAACAACTTTTCGCAAAGATGGCGGACAAGATACTGCCAGTGTTGGAAGCAGTGCTAGTGAGAAAGGTCCTGGATCAGGAAGAAACTCTCCTGTGGTCAGAGATAAGAAGCTGTTCAAAAGCACGGGAGTCAAGAAAGAGGTTGGCTCACTTGGGTCACAAATGTTTGCTAACAAACTTCGGAAGACTGGAAAGGAATTTGGAGCTTTTGAAAAACACACAAAAGGATTTGGAATGAAAATGCTTCAACAGATGGGTTATGAACCAGGCAAAGGTCTGGGTAAGGAAGGACAGGGCATTGTGTTTCCAGTGGAAGCTTACAAGCGTGAAGGCCGTGGAGCATTGGGTAGTTATGGTCCAGAGAGAACCAAGAAAGCTCAAGAGTTACGACCTAATTATGACGAAGAAGAAGAGGAGGAAGAAAAATTTAAAGAACAACTTCAACAGTGGAAGAAAACAGATGAGGGATATTCAAAACCAAAGTATGTTTACAAAACTGCAGATGAAGTCAAGGCTTCTGGAGGAACCAAAAAGGGACCATCCATATCTCTGAAGCACAGCAAAATAAAGGTTGTCGACATGACTGGACCAGAAACAAAGATCCTAACAGGTTATGGCTCCATTGCCCAGCAGCATGCCAAGCCAGGAGAAGTCCCTCCAACCACTTTAGCTCGAGATGCAGAGGCGTCGTTTTCCATGCCAGAATTGACATACAACTTAAATCTCCTGATTGATATGGCAGAGACAGACATAATTCAAACAGACAGACAATTAAAATATGAGCGAGATCTTGTGGTTAACCTTAAACATGAAGAAGAGAAGCTCACTACAGTGTTAGAACGAGAAGAAAAAGACATCAAAAGATTGATGGAAGTCATCAATATGATTGATAGCTGTCGACAACAGTCACTGTCACCAGATGATGATGCCCTTACTCTTGATAAGTGTGAACAAATTTTTAATACTTTGCAAGAAGACTACTATGAGGAATTCAAGATGTACGACTTGGCATCCCTAGCAGAACCTCTTGTTTTCTCTTTGCTGAGGAATCATTTTCAAGGCTGGAATCCTCTTCTTAATCCTTCTCATGGATTGGAGGTGATGGTTAGATGGCAGGAAATACTACAAAGGAAAGAAGCTGAAAACTCTGCATTCACCCTGACACTGAACCAAGGACTGGCACATGGAGAGGAAAAAATGAAGATGTATGACCGACTTGTGTGGGAAGTCTGGATGCCATTCCTTCGATCTGCAATGTGTACATGGAACTGTCGCAACTATGATGGCATGACAAACTTGATTAACACCTGGGCCCCAGTCTTCCCTCCGTGGATCACAGAAAACATCAAACAGCAGCTAGTTCTACCTCGTCTGCAGGCTGAAGTAGATGCATGGAATCCATTAACAGACTGTGTTCCTGTCCATGCATGGATCCATCCTTGGCTTCCTCTCATGGGTGACCAACTTGAGCCCCTGTATGCACCAATCAGGTTCAAGTTAGCGTCGGCCCTCACCAACTGGCACCCCTCGGACCCTTCTGCAAAGATGATCCTAGAACCCTGGACCAAGGTTTTTTCCAAAGGTACAATGGATGCCTTCATTCTTCGTTCTATTTACCCCAAGCTGTCACAGTGCTTGGCTGAGTTCATCATAAACCCCCATCAGCAACACTTAGAACCTTTTCATTGGGTCATGGAGTGGAAGGACATAATAACACAACAGCATTTCATCAGTTTGCTGGAGAAACATTTCTTTCCACGTTGGATTCAGGTTCTTCGTGGCTGGCTGAGTGTGAGTCCGAATTATGATGAAGTCATCCAATGGTATTCAGGCTGGAAGGGCATGTTTAGCGAGGATCTACTCAACAATCCAAGTGTCAAAGTTCAGTTCAACCGAGCGCTTGACGTCATGAATCAGGCTGTGACGTCACCAGGTGGCCTGCTACAGCCGGGTGCTAAGGAGAACATAGCTTATCTGACCAGCACTGAAAGAAGGAGAGAAGCCGAGGCAGCAGCCATGGCAGCGGCAGTTGAAAAACAAAAGGCTGAAGCAGCTCGACAAGTGGCGGCCTCTCAGAACGTTCCTTCCAATTTTAAAGACCTCATACAAAACTTGGCTGAAGAGAACAATCTTTTATTCATGCCAATTCCTAACCGACGTTTCGACGGCAAAGCTTTATACTCGCTGGGTAAAGTGACGCTGTATATCGACAGAGGAGTTGTGTTCGCTCACACACAAGGCGTGTGGAAACCCGTATCGTTACAAGACCTAATGGCTATGGCAAAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q66J74	Tuftelin-interacting protein 11 OS=Xenopus laevis OX=8355 GN=tfip11 PE=2 SV=1
Q5ZII9	Tuftelin-interacting protein 11 OS=Gallus gallus OX=9031 GN=TFIP11 PE=2 SV=1
Q06AK6	Tuftelin-interacting protein 11 OS=Sus scrofa OX=9823 GN=TFIP11 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004065 (this species only)
Transcription factor family	GCFC · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01210 all species →	NAD_Gly3P_dh_N	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus	Family	Interproscan
PF01585 all species →	G-patch	G-patch domain	Family	Interproscan
PF07479 all species →	NAD_Gly3P_dh_C	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus	Domain	Interproscan
PF07842 all species →	GCFC	GC-rich sequence DNA-binding factor-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011128 all species →	Domain	Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR045211 all species →	Family	TFP11/STIP/Ntr1	Interproscan
IPR013328 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR006109 all species →	Domain	Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal	Interproscan
IPR006168 all species →	Family	Glycerol-3-phosphate dehydrogenase, NAD-dependent	Interproscan
IPR022783 all species →	Domain	GCF, C-terminal	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23329 all species →	TUFTELIN-INTERACTING PROTEIN 11-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0046168 all species →	Biological Process	glycerol-3-phosphate catabolic process	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0000390 all species →	Biological Process	spliceosomal complex disassembly	Interproscan
GO:0071008 all species →	Cellular Component	U2-type post-mRNA release spliceosomal complex	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0047952 all species →	Molecular Function	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity	Interproscan
GO:0006072 all species →	Biological Process	glycerol-3-phosphate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap7.225.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.