Gene detail

Detailed information of evm.model.Ap7.226 in Astrangia poculata

Genomic Location: Ap7:2943592...2977430
NR annotation: XP_029179422.2, probable ATP-dependent RNA helicase DDX46 [Acropora millepora]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.226

gaaaactcaaaattattgaacatcactgtaacagatgggaagagacaccaagtcacgtaagaaaagatctcggtccagatcaggcagtcgtgacaggaaccgtcgagaaagatacaaggagcgaaggagatctcgcagtaagagccaggaaaagggaagagataaaacaagtcgtaagccaagagagcgagagcaaaagcaagaaagaaagcgaaaaagatcagagagtggctcgtctcacagtgtgtcgtcaaggagccggagtcgtagccctaatcataagaagaaggagaaagaagttcagcgtaagcgtcgatctcgaagcagaagcactgaaaagaaaacaaggaaagagagacctcgcagtaaggaaagagacagaggtcgtgacaaagatagaaaaagacgatcaagaagccacaacaagtcaagttcttctagttcacgatcaagaagtagaagtccagataaggagcaaagaaaatccaaaagcaggttgccgagacaagagaaagcgagatgaagatgacagctcagatcgaaccaaagatagcaagaaacccaaggagtcaaagaaagatgtgacaagttcaagcgtagatgaaaaacgtgttgaggatgacaaggatacagaacagaaacgattagaagatgagatgcaaaagagaagagaaagaatagaggcatggagagcccagcgtaaaaaagaacaagaagacaaacggcagagtgaagaaactgtgagtgaatatcagcaaaagaagacaaaagtatggagtcttgaggacgacgaggatgatgacgaagaagaagatgaaacagaaggggtcaatgaagaggtccaggatgctgaggatgaaccaaaacttaagaaaggcacaagtaataaaaaagataatacaagtgtttctaatggaaaagttaaagaggagcccgaagatgacgacgttgaccccctggatgcttttatggctgacgtcagcaaagaggtgaagaaaatcaatgctgtagatcagaagaagaaagttggtaaagctgggaaggcaacggtgatacatcacgttgtcaccaaaaccaaaaagagggatccaaccaaaggtgaattgatggaaaatgatcaagatgcaatggagtattcctcagaggaggaggtggaagaggagactattgaatcaacgtacgcacacttcaaaaccaagaagaagaaggatcttcaagcagtggaccatgaaaaagtgtactactctacatttagaaagaatttctatgttgaagtcccagaactggcaagaatgaccccagaagcggttgaggaattccgagcaaaactggagcacattcgagttcgcgggaaagattgtccaactcctgtcaaaacatgggctcagacaggagttagcttaaaaatactggaggttctcaaaaggaacggttacgagaagcccacaccaatccaagctcaaggcataccaaccatcatgtgtggtagagatatgataggaattgccaagacaggcagtggaaagacgctagcatttcttcttcccatgtaccgccatgttgtggatcagcctgaactggagagagacgatggaccaataggcattataatgacaccgacaagagagcttgctcttcaaattcaccgcgagtgtaagaagttctgcaagcctcttaatctgcgagcggtctgtgtttatggtggcacaggaatcagtgaacagattgcagaactaaaacgcggagcagaaatcattgtgtgtactcctggcagaatgattgacatgttgacagccaataatggtcgtgtcacaaattgccgtcgttgtacttatttagttctggatgaagctgataggatgtttgatatgggatttgagcctcaggtaatgagaattattgactgtatcagacccgacaagcagactgtcatgttctcggctacattcccgcgtcagatggaagcgctggccagaaagatcctaactaaaccaattgagatacaagttggtggtcgaagtattgtttgctcagatgtgacacaaaacgtggttgttatcgaagaggatgacaagttcttaaagttacttgagttgcttggtaattaccaagaagaaggtagtgtcttggcgttcgtcgaaaagcaagaaaaagctgacatgttgtttaaagatcttctgaaaacgtcctacccttgtctgtctctccatggaggcatggatcagttcgatcgtgatagcacaattgccgatttcaagaatggagtcactaacttaatgattgctacttctgttgcggcgagaggcctggatgtgaagcagctgatcctagtagttaactatgactgtccaaatcactatgaagattatgtgcatagatgcgggcgtactggccgagcaggaaggaaaggaactgcatacacatttataacttctgaacagggaaggcatgcaggcgatattataaaggcattagaatcgtccgaggcagaagttccagatgatctacggaagttatggcatgattatacagaggagaggaaagcggagggaaagaacgtggtgaaaaacagtggctttacgggaaaaggattcaagtttaatgacgaagaggcagctaaagtcaacgaggcgaaaaagattcagaaatgggctctcggtcttcaagactctgacgatgaagccgaagctgaagagaaagctgtagaggaaattgacaaacagttggacgctgtgttcagtaaaggcaaaccgcacatcaagaaagcggcgcccaccggaggaggtagtgaacaaatcaagggcgaacaacaagctaaactaaacctggccacaagtatcgcagctaaaatcaaccagaagataatcgccggtacaaacaatatggacccgacacagcaagctgccagccagattatcaaagggggaactgttactgctcttaccggcctgggtctagccaaacagctagccgagaaaattcatgggaagatcggttacgaagccccagtggaggagacgaaacaggacgaggaaaaacaggataaaaatgaacagcgatatgaagatgaggtggaaataaatgacttcccacagacagccaggtggaaagtcacttctaaggaaacaattttgaacataactgaagtgtctgaagccgccattactgtgcgtggaacgttctttcctccaggcaaagtacccaaggaagaaggcgagaggaaaatctatttatacctcgaaggtccttctgaacgttcaatccatctagccaaagtggaaataaagcgagtcgtcaaagaagagatgataagactggggtccttccgtggtccacaatctactggcagatacaaagttctaaagactttgtgttatgatctgcagtcctatatcctgactctgtttgctatttacgcgttccggcaatctggaatattagaagaggaagagtcacaggctaaaatggcgactaaagtaggaatagacgtcgagacgcagacagaccctgagataactggcgtggacgcggatgatttcgaagaggaaggcgatggcgaagaaactggctcggacagcagcgaaagcgaagacgaagaggctggagaagatggccagtcgaagagcgtcgacaaaggaacgtcctccaaaccagtgcgccgtaaaataatcgagctcaagtattattttggggaagatttacctgatgcggagctcagtaaacttgcccaagcagaagtcattgttcctcctggacttgaagtaaaggaatctaatattccaaaggctggtcgaggtgtatttgccaagtgtgtaattcccaagcatgacttttttggtccatttgttggtaaaaaggttacagcagaggaggcgaagcattataaagactcgccatatgtatgggaggtgcgagatgactatgggaagctgatgcacttggttgatggacgtgatgcatttcagtccaattggctgcgctatgtaaactgttctaaaagtattggagatcagaacatccgtgctgttcaatatgatggaaacatttactacatggccaccaaacagattgagatcggagatgagctgttaacattttacggtgaaaagtttgccaggattcttgggattagaacctcaaagaaaggaacatctaaggataaagaagctaataatgatgaaagctttgcatgcaagaactgtggcaaaatgtacagtaatcctgcatcactcattggtcatctgaagtacaagtgtaatacaggtcaacaaagaagcatctttgttcctcagcctactggtccacgtgcctccattcccaaaatcaaagtcactgaagagtatgctcgccaacagaatgagaagctaaagaagttcaaatgtgacgaatgtggcaaggcgtttatccgcaactacaccctgcagtgccataagttgatccacactggtgttaaagaacacaagtgtacggagtgtggcaaagagttcactctgctgaaacatctgcaacgccaccaactggttcacaccggggagaagccatacaagtgtcacctctgtggtcgtgctttttcgcagcagggcagtcttcaagcgcacagccgcacgcacactggagtaaagccttattcgtgtaagatctgtggccgagcatttgcactgcagtcaccgttgctgtcccatatgaggacacacagtcaggagaaagcctttaagtgcaatacttgtggaaaggccttcacacacaggaacaccctgtccaggcatgaattgatccacactggcatacgtccatttaagtgcgacaagtgtgggaagacctttacgcagaccaatgatctcaagcgccatagccgtatccacactggtttacgcccctacaagtgtcacatttgcggcaaggccttcacggtggagtttaccttggtttgccatgtccgtacccacactggtagtcggccttacaagtgcaactactgtgagaagacatttacccagccaggtgcccgtctgaagcatgtgcgtaagaatcatccagataagccgttacctggaaaggagacaagtacgaccacctccaatcaagctgtagcagagaatgaagctactggtgccattgatgaaacacaagcctctgataacatcactgatgatgtgccacaagccgctaacgatgtgccacaagctgctaaggatgtgccacaagctgctaatggtgacggtgatgttgagatgtcagagtcacccattgttgttgtggatgttccagtagctctgccaaaccaggaagctcttgtgcagtcagcttaa

Transcript

evm.model.Ap7.226

GAAAACTCAAAATTATTGAACATCACTGTAACAGATGGGAAGAGACACCAAGTCACGTAAGAAAAGATCTCGGTCCAGATCAGGCAGTCGTGACAGGAACCGTCGAGAAAGATACAAGGAGCGAAGGAGATCTCGCAGTAAGAGCCAGGAAAAGGGAAGAGATAAAACAAGTCGTAAGCCAAGAGAGCGAGAGCAAAAGCAAGAAAGAAAGCGAAAAAGATCAGAGAGTGGCTCGTCTCACAGTGTGTCGTCAAGGAGCCGGAGTCGTAGCCCTAATCATAAGAAGAAGGAGAAAGAAGTTCAGCGTAAGCGTCGATCTCGAAGCAGAAGCACTGAAAAGAAAACAAGGAAAGAGAGACCTCGCAGTAAGGAAAGAGACAGAGGTCGTGACAAAGATAGAAAAAGACGATCAAGAAGCCACAACAAGTCAAGTTCTTCTAGTTCACGATCAAGAAGTAGAAGTCCAGATAAGGAGCAAAGAAAATCCAAAAGCAGGTTGCCGAGACAAGAGAAAGCGAGATGAAGATGACAGCTCAGATCGAACCAAAGATAGCAAGAAACCCAAGGAGTCAAAGAAAGATGTGACAAGTTCAAGCGTAGATGAAAAACGTGTTGAGGATGACAAGGATACAGAACAGAAACGATTAGAAGATGAGATGCAAAAGAGAAGAGAAAGAATAGAGGCATGGAGAGCCCAGCGTAAAAAAGAACAAGAAGACAAACGGCAGAGTGAAGAAACTGTGAGTGAATATCAGCAAAAGAAGACAAAAGTATGGAGTCTTGAGGACGACGAGGATGATGACGAAGAAGAAGATGAAACAGAAGGGGTCAATGAAGAGGTCCAGGATGCTGAGGATGAACCAAAACTTAAGAAAGGCACAAGTAATAAAAAAGATAATACAAGTGTTTCTAATGGAAAAGTTAAAGAGGAGCCCGAAGATGACGACGTTGACCCCCTGGATGCTTTTATGGCTGACGTCAGCAAAGAGGTGAAGAAAATCAATGCTGTAGATCAGAAGAAGAAAGTTGGTAAAGCTGGGAAGGCAACGGTGATACATCACGTTGTCACCAAAACCAAAAAGAGGGATCCAACCAAAGGTGAATTGATGGAAAATGATCAAGATGCAATGGAGTATTCCTCAGAGGAGGAGGTGGAAGAGGAGACTATTGAATCAACGTACGCACACTTCAAAACCAAGAAGAAGAAGGATCTTCAAGCAGTGGACCATGAAAAAGTGTACTACTCTACATTTAGAAAGAATTTCTATGTTGAAGTCCCAGAACTGGCAAGAATGACCCCAGAAGCGGTTGAGGAATTCCGAGCAAAACTGGAGCACATTCGAGTTCGCGGGAAAGATTGTCCAACTCCTGTCAAAACATGGGCTCAGACAGGAGTTAGCTTAAAAATACTGGAGGTTCTCAAAAGGAACGGTTACGAGAAGCCCACACCAATCCAAGCTCAAGGCATACCAACCATCATGTGTGGTAGAGATATGATAGGAATTGCCAAGACAGGCAGTGGAAAGACGCTAGCATTTCTTCTTCCCATGTACCGCCATGTTGTGGATCAGCCTGAACTGGAGAGAGACGATGGACCAATAGGCATTATAATGACACCGACAAGAGAGCTTGCTCTTCAAATTCACCGCGAGTGTAAGAAGTTCTGCAAGCCTCTTAATCTGCGAGCGGTCTGTGTTTATGGTGGCACAGGAATCAGTGAACAGATTGCAGAACTAAAACGCGGAGCAGAAATCATTGTGTGTACTCCTGGCAGAATGATTGACATGTTGACAGCCAATAATGGTCGTGTCACAAATTGCCGTCGTTGTACTTATTTAGTTCTGGATGAAGCTGATAGGATGTTTGATATGGGATTTGAGCCTCAGGTAATGAGAATTATTGACTGTATCAGACCCGACAAGCAGACTGTCATGTTCTCGGCTACATTCCCGCGTCAGATGGAAGCGCTGGCCAGAAAGATCCTAACTAAACCAATTGAGATACAAGTTGGTGGTCGAAGTATTGTTTGCTCAGATGTGACACAAAACGTGGTTGTTATCGAAGAGGATGACAAGTTCTTAAAGTTACTTGAGTTGCTTGGTAATTACCAAGAAGAAGGTAGTGTCTTGGCGTTCGTCGAAAAGCAAGAAAAAGCTGACATGTTGTTTAAAGATCTTCTGAAAACGTCCTACCCTTGTCTGTCTCTCCATGGAGGCATGGATCAGTTCGATCGTGATAGCACAATTGCCGATTTCAAGAATGGAGTCACTAACTTAATGATTGCTACTTCTGTTGCGGCGAGAGGCCTGGATGTGAAGCAGCTGATCCTAGTAGTTAACTATGACTGTCCAAATCACTATGAAGATTATGTGCATAGATGCGGGCGTACTGGCCGAGCAGGAAGGAAAGGAACTGCATACACATTTATAACTTCTGAACAGGGAAGGCATGCAGGCGATATTATAAAGGCATTAGAATCGTCCGAGGCAGAAGTTCCAGATGATCTACGGAAGTTATGGCATGATTATACAGAGGAGAGGAAAGCGGAGGGAAAGAACGTGGTGAAAAACAGTGGCTTTACGGGAAAAGGATTCAAGTTTAATGACGAAGAGGCAGCTAAAGTCAACGAGGCGAAAAAGATTCAGAAATGGGCTCTCGGTCTTCAAGACTCTGACGATGAAGCCGAAGCTGAAGAGAAAGCTGTAGAGGAAATTGACAAACAGTTGGACGCTGTGTTCAGTAAAGGCAAACCGCACATCAAGAAAGCGGCGCCCACCGGAGGAGGTAGTGAACAAATCAAGGGCGAACAACAAGCTAAACTAAACCTGGCCACAAGTATCGCAGCTAAAATCAACCAGAAGATAATCGCCGGTACAAACAATATGGACCCGACACAGCAAGCTGCCAGCCAGATTATCAAAGGGGGAACTGTTACTGCTCTTACCGGCCTGGGTCTAGCCAAACAGCTAGCCGAGAAAATTCATGGGAAGATCGGTTACGAAGCCCCAGTGGAGGAGACGAAACAGGACGAGGAAAAACAGGATAAAAATGAACAGCGATATGAAGATGAGGTGGAAATAAATGACTTCCCACAGACAGCCAGGTGGAAAGTCACTTCTAAGGAAACAATTTTGAACATAACTGAAGTGTCTGAAGCCGCCATTACTGTGCGTGGAACGTTCTTTCCTCCAGGCAAAGTACCCAAGGAAGAAGGCGAGAGGAAAATCTATTTATACCTCGAAGGTCCTTCTGAACGTTCAATCCATCTAGCCAAAGTGGAAATAAAGCGAGTCGTCAAAGAAGAGATGATAAGACTGGGGTCCTTCCGTGGTCCACAATCTACTGGCAGATACAAAGTTCTAAAGACTTTGTGTTATGATCTGCAGTCCTATATCCTGACTCTGTTTGCTATTTACGCGTTCCGGCAATCTGGAATATTAGAAGAGGAAGAGTCACAGGCTAAAATGGCGACTAAAGTAGGAATAGACGTCGAGACGCAGACAGACCCTGAGATAACTGGCGTGGACGCGGATGATTTCGAAGAGGAAGGCGATGGCGAAGAAACTGGCTCGGACAGCAGCGAAAGCGAAGACGAAGAGGCTGGAGAAGATGGCCAGTCGAAGAGCGTCGACAAAGGAACGTCCTCCAAACCAGTGCGCCGTAAAATAATCGAGCTCAAGTATTATTTTGGGGAAGATTTACCTGATGCGGAGCTCAGTAAACTTGCCCAAGCAGAAGTCATTGTTCCTCCTGGACTTGAAGTAAAGGAATCTAATATTCCAAAGGCTGGTCGAGGTGTATTTGCCAAGTGTGTAATTCCCAAGCATGACTTTTTTGGTCCATTTGTTGGTAAAAAGGTTACAGCAGAGGAGGCGAAGCATTATAAAGACTCGCCATATGTATGGGAGGTGCGAGATGACTATGGGAAGCTGATGCACTTGGTTGATGGACGTGATGCATTTCAGTCCAATTGGCTGCGCTATGTAAACTGTTCTAAAAGTATTGGAGATCAGAACATCCGTGCTGTTCAATATGATGGAAACATTTACTACATGGCCACCAAACAGATTGAGATCGGAGATGAGCTGTTAACATTTTACGGTGAAAAGTTTGCCAGGATTCTTGGGATTAGAACCTCAAAGAAAGGAACATCTAAGGATAAAGAAGCTAATAATGATGAAAGCTTTGCATGCAAGAACTGTGGCAAAATGTACAGTAATCCTGCATCACTCATTGGTCATCTGAAGTACAAGTGTAATACAGGTCAACAAAGAAGCATCTTTGTTCCTCAGCCTACTGGTCCACGTGCCTCCATTCCCAAAATCAAAGTCACTGAAGAGTATGCTCGCCAACAGAATGAGAAGCTAAAGAAGTTCAAATGTGACGAATGTGGCAAGGCGTTTATCCGCAACTACACCCTGCAGTGCCATAAGTTGATCCACACTGGTGTTAAAGAACACAAGTGTACGGAGTGTGGCAAAGAGTTCACTCTGCTGAAACATCTGCAACGCCACCAACTGGTTCACACCGGGGAGAAGCCATACAAGTGTCACCTCTGTGGTCGTGCTTTTTCGCAGCAGGGCAGTCTTCAAGCGCACAGCCGCACGCACACTGGAGTAAAGCCTTATTCGTGTAAGATCTGTGGCCGAGCATTTGCACTGCAGTCACCGTTGCTGTCCCATATGAGGACACACAGTCAGGAGAAAGCCTTTAAGTGCAATACTTGTGGAAAGGCCTTCACACACAGGAACACCCTGTCCAGGCATGAATTGATCCACACTGGCATACGTCCATTTAAGTGCGACAAGTGTGGGAAGACCTTTACGCAGACCAATGATCTCAAGCGCCATAGCCGTATCCACACTGGTTTACGCCCCTACAAGTGTCACATTTGCGGCAAGGCCTTCACGGTGGAGTTTACCTTGGTTTGCCATGTCCGTACCCACACTGGTAGTCGGCCTTACAAGTGCAACTACTGTGAGAAGACATTTACCCAGCCAGGTGCCCGTCTGAAGCATGTGCGTAAGAATCATCCAGATAAGCCGTTACCTGGAAAGGAGACAAGTACGACCACCTCCAATCAAGCTGTAGCAGAGAATGAAGCTACTGGTGCCATTGATGAAACACAAGCCTCTGATAACATCACTGATGATGTGCCACAAGCCGCTAACGATGTGCCACAAGCTGCTAAGGATGTGCCACAAGCTGCTAATGGTGACGGTGATGTTGAGATGTCAGAGTCACCCATTGTTGTTGTGGATGTTCCAGTAGCTCTGCCAAACCAGGAAGCTCTTGTGCAGTCAGCTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q569Z5	Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus OX=10090 GN=Ddx46 PE=1 SV=2
Q62780	Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus OX=10116 GN=Ddx46 PE=1 SV=1
Q4TVV3	Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio OX=7955 GN=ddx46 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004806 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF21549 all species →	PRDM2_PR	PR domain zinc finger protein 2, PR domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR044417 all species →	Domain	PRDM7/PRDM9, PR/SET domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24394 all species →	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12811	DDX46, PRP5; ATP-dependent RNA helicase DDX46/PRP5	EC:5.6.2.7	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.