Genomic Location: Ap7:23982847...23995587
NR annotation: XP_022806937.1, cytoplasmic dynein 1 intermediate chain 2-like [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap7.2286 |
| Transcript |
| evm.model.Ap7.2286 |
| Protein |
| evm.model.Ap7.2286 |
| UniProt accession | Description |
|---|---|
| Q0III3 | Cytoplasmic dynein 1 intermediate chain 2 OS=Bos taurus OX=9913 GN=DYNC1I2 PE=1 SV=1 |
| O88487 | Cytoplasmic dynein 1 intermediate chain 2 OS=Mus musculus OX=10090 GN=Dync1i2 PE=1 SV=1 |
| E7F6H7 | Dynein, cytoplasmic 1, intermediate chain 2a OS=Danio rerio OX=7955 GN=dync1i2a PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006269 (this species only) · gene tree & orthology |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11540 all species → | Dynein_IC2 | Cytoplasmic dynein 1 intermediate chain 2 | Family | Interproscan |
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR025956 all species → | Family | Cytoplasmic dynein 1 intermediate chain 1/2 | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR050687 all species → | Family | Dynein Intermediate Chain | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12442 all species → | DYNEIN INTERMEDIATE CHAIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005868 all species → | Cellular Component | cytoplasmic dynein complex | Interproscan |
| GO:0007018 all species → | Biological Process | microtubule-based movement | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0010970 all species → | Biological Process | transport along microtubule | Interproscan |
| GO:0045503 all species → | Molecular Function | dynein light chain binding | Interproscan |
| GO:0045504 all species → | Molecular Function | dynein heavy chain binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10415 | DYNC1I, DNCI; dynein cytoplasmic 1 intermediate chain | - | Cytoskeleton proteins | ko04812 | deepkoala |
Transcript abundance of evm.model.Ap7.2286 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
