Gene detail

Detailed information of evm.model.Ap7.231 in Astrangia poculata

Genomic Location: Ap7:3011858...3034046
NR annotation: XP_020601442.1, sodium/glucose cotransporter 1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.231

atggcagaagctcactataaaccccctgggctggaagcttgggatattgtcatagtcgtgttgtatttctttatcattcttggagtgggactatacgccatgtataagtccaaccgtggtactgtcagtggttatttcttggctggtagatttatgacatggcttccagttggtgcatcgctgtttgcaagtaacattggcagtgaacacttcattggtttggcaggatcaggagctgctggtgggattggagttggagcatttgaattcaatgcaataattctgctgcagttgcttggttgggtgtttctacctgtctatattgctggtgggatctgcactttaccagaatacatttgccgtcgctttggtggcaaaagactgagaatgtggctttcggttgtctcccttctgctgtacattttcactaaaatatctgtaaacttgttttctggagccttgtttattcgtttagctcttggatggaatctgtactttgcaattttgttgatgctcggaatgacatgtctctgtacaattactggtggacttacagcagtgatctacacagacacactctgcacctttctgatggttactggatccctgacagtcatgggaattgggttttcagaagttggtggttatgagggacttcggcagaagtacatgatggcagtgtcaaatgacacactttactcaaacagcagttgtggccggccaagagatgactcgtttgtcatgttacgagatcctatcaattctgacatgccttgggcagggttcctttttggacaaacgattgcctcaatttggtattggtgtgctgatcaggttattgttcagagagctcttgctgccaaaagtctgtctcatgctcagggaggctgcctgttggctggctacattaagatcttgcctctcttcaccctggtcatgccaggaatgatcagtagggtgctgtcaccagatcgagttgcttgtagtgttccagagaagtgcatggaaatttgtggcagtgaagttgcttgcactaacattgcatatccagagcttgttctcaaactcatgccgacaggtctcagaggattgatgatggctgtaatgatggcggctctgatgagtgacttgacgtcaatcttcaacagtgccagcactctgttcactattgatgtgtatggtagatttagaacaaaggcttcagtcagggaactcatgattgtgggaaggatcatggtcgccattatgacaggaataggtatcctgtggattccagttgtgcagaatgtacagggagggcagcttttcctctacatccaagctgtcagtgcatacttctctccaccaatcgcagccctttatctgattgccatcctttggacaagggcaacagaaaagggtgccttctggggtatgattgtggggttcattgtgggtgcaatacgcatgatcctggacttcactcaccttgagccccggtgcggtgagcctgacacgcgcccgtccatcatagccaaggtccattacatgtactttgctctgattctcttctggatcacatttatcaccattgttgttatcagcttgtttacagaacaagagaaggatggaaatgtggctcgtctgacttggtggactctgcacgagaaaccatcagacactgatgtcatggaagaggcgagggatgaagagattgagatgcaagagattcctgaagacgaagaagaagagaaaggagaagaagaaaagaagaaagaagacgaagaagcagcagcagaagacgatcacgagaaggacgcaactgaaaagactccagctgtggatacaagacctaaaagtcattcattccgacataaaccagaatctagagtaaagcgattctactcgtggttctgtggctatgaagcaggaactgaagaagcgaagcaagcggcccatgaacaacacgagcgactcgccatgataacatccctggagcggaatccgtacgccgaaaccttcctaaacatcaatgtcattatcatcctcgctgtcgggctctacctctacattttcttttctatttaa

Transcript

evm.model.Ap7.231

ATGGCAGAAGCTCACTATAAACCCCCTGGGCTGGAAGCTTGGGATATTGTCATAGTCGTGTTGTATTTCTTTATCATTCTTGGAGTGGGACTATACGCCATGTATAAGTCCAACCGTGGTACTGTCAGTGGTTATTTCTTGGCTGGTAGATTTATGACATGGCTTCCAGTTGGTGCATCGCTGTTTGCAAGTAACATTGGCAGTGAACACTTCATTGGTTTGGCAGGATCAGGAGCTGCTGGTGGGATTGGAGTTGGAGCATTTGAATTCAATGCAATAATTCTGCTGCAGTTGCTTGGTTGGGTGTTTCTACCTGTCTATATTGCTGGTGGGATCTGCACTTTACCAGAATACATTTGCCGTCGCTTTGGTGGCAAAAGACTGAGAATGTGGCTTTCGGTTGTCTCCCTTCTGCTGTACATTTTCACTAAAATATCTGTAAACTTGTTTTCTGGAGCCTTGTTTATTCGTTTAGCTCTTGGATGGAATCTGTACTTTGCAATTTTGTTGATGCTCGGAATGACATGTCTCTGTACAATTACTGGTGGACTTACAGCAGTGATCTACACAGACACACTCTGCACCTTTCTGATGGTTACTGGATCCCTGACAGTCATGGGAATTGGGTTTTCAGAAGTTGGTGGTTATGAGGGACTTCGGCAGAAGTACATGATGGCAGTGTCAAATGACACACTTTACTCAAACAGCAGTTGTGGCCGGCCAAGAGATGACTCGTTTGTCATGTTACGAGATCCTATCAATTCTGACATGCCTTGGGCAGGGTTCCTTTTTGGACAAACGATTGCCTCAATTTGGTATTGGTGTGCTGATCAGGTTATTGTTCAGAGAGCTCTTGCTGCCAAAAGTCTGTCTCATGCTCAGGGAGGCTGCCTGTTGGCTGGCTACATTAAGATCTTGCCTCTCTTCACCCTGGTCATGCCAGGAATGATCAGTAGGGTGCTGTCACCAGATCGAGTTGCTTGTAGTGTTCCAGAGAAGTGCATGGAAATTTGTGGCAGTGAAGTTGCTTGCACTAACATTGCATATCCAGAGCTTGTTCTCAAACTCATGCCGACAGGTCTCAGAGGATTGATGATGGCTGTAATGATGGCGGCTCTGATGAGTGACTTGACGTCAATCTTCAACAGTGCCAGCACTCTGTTCACTATTGATGTGTATGGTAGATTTAGAACAAAGGCTTCAGTCAGGGAACTCATGATTGTGGGAAGGATCATGGTCGCCATTATGACAGGAATAGGTATCCTGTGGATTCCAGTTGTGCAGAATGTACAGGGAGGGCAGCTTTTCCTCTACATCCAAGCTGTCAGTGCATACTTCTCTCCACCAATCGCAGCCCTTTATCTGATTGCCATCCTTTGGACAAGGGCAACAGAAAAGGGTGCCTTCTGGGGTATGATTGTGGGGTTCATTGTGGGTGCAATACGCATGATCCTGGACTTCACTCACCTTGAGCCCCGGTGCGGTGAGCCTGACACGCGCCCGTCCATCATAGCCAAGGTCCATTACATGTACTTTGCTCTGATTCTCTTCTGGATCACATTTATCACCATTGTTGTTATCAGCTTGTTTACAGAACAAGAGAAGGATGGAAATGTGGCTCGTCTGACTTGGTGGACTCTGCACGAGAAACCATCAGACACTGATGTCATGGAAGAGGCGAGGGATGAAGAGATTGAGATGCAAGAGATTCCTGAAGACGAAGAAGAAGAGAAAGGAGAAGAAGAAAAGAAGAAAGAAGACGAAGAAGCAGCAGCAGAAGACGATCACGAGAAGGACGCAACTGAAAAGACTCCAGCTGTGGATACAAGACCTAAAAGTCATTCATTCCGACATAAACCAGAATCTAGAGTAAAGCGATTCTACTCGTGGTTCTGTGGCTATGAAGCAGGAACTGAAGAAGCGAAGCAAGCGGCCCATGAACAACACGAGCGACTCGCCATGATAACATCCCTGGAGCGGAATCCGTACGCCGAAACCTTCCTAAACATCAATGTCATTATCATCCTCGCTGTCGGGCTCTACCTCTACATTTTCTTTTCTATTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VDT1	Sodium/glucose cotransporter 4 OS=Mus musculus OX=10090 GN=Slc5a9 PE=1 SV=3
P31637	Sodium/myo-inositol cotransporter OS=Canis lupus familiaris OX=9615 GN=SLC5A3 PE=1 SV=1
Q9JKZ2	Sodium/myo-inositol cotransporter OS=Mus musculus OX=10090 GN=Slc5a3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000933 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00474 all species →	SSF	Sodium:solute symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018212 all species →	Conserved_site	Sodium/solute symporter, conserved site	Interproscan
IPR001734 all species →	Family	Sodium/solute symporter	Interproscan
IPR038377 all species →	Homologous_superfamily	Sodium/glucose symporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11819 all species →	SOLUTE CARRIER FAMILY 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005412 all species →	Molecular Function	D-glucose:sodium symporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14383	SLC5A3, SMIT; solute carrier family 5 (sodium/myo-inositol cotransporter), member 3	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.