Detailed information of evm.model.Ap7.2358 in Astrangia poculata

Genomic Location: Ap7:24771802...24793741
NR annotation: XP_020602093.1, polycystic kidney disease 1-related protein-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B8UU59Polycystin-1-related protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004670 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08016
all species →		PKD_channelPolycystin cation channelFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051223
all species →		FamilyPolycystinInterproscan
IPR013122
all species →		DomainPolycystin cation channel, PKD1/PKD2Interproscan
IPR000434
all species →		FamilyPolycystic kidney disease type 1 proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10877
all species →		POLYCYSTIN FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005262
all species →		Molecular Functioncalcium channel activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0050982
all species →		Biological Processdetection of mechanical stimulusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap7.2358.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap7.2358 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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