Genomic Location: Ap7:24797330...24831503
NR annotation: XP_020602104.1, polycystic kidney disease 1-related protein-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap7.2359 |
| Transcript |
| evm.model.Ap7.2359 |
| Protein |
| evm.model.Ap7.2359 |
| UniProt accession | Description |
|---|---|
| B8UU59 | Polycystin-1-related protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1 |
| Q8TDX9 | Polycystin-1-like protein 1 OS=Homo sapiens OX=9606 GN=PKD1L1 PE=1 SV=1 |
| O08852 | Polycystin-1 OS=Mus musculus OX=10090 GN=Pkd1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004670 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01822 all species → | WSC | WSC domain | Domain | Interproscan |
| PF02010 all species → | REJ | REJ domain | Family | Interproscan |
| PF00801 all species → | PKD | PKD domain | Domain | Interproscan |
| PF01825 all species → | GPS | GPCR proteolysis site, GPS, motif | Motif | Interproscan |
| PF01477 all species → | PLAT | PLAT/LH2 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001024 all species → | Domain | PLAT/LH2 domain | Interproscan |
| IPR000203 all species → | Conserved_site | GPS motif | Interproscan |
| IPR002889 all species → | Domain | Carbohydrate-binding WSC | Interproscan |
| IPR035986 all species → | Homologous_superfamily | PKD domain superfamily | Interproscan |
| IPR036392 all species → | Homologous_superfamily | PLAT/LH2 domain superfamily | Interproscan |
| IPR002859 all species → | Domain | PKD/REJ-like domain | Interproscan |
| IPR000601 all species → | Domain | PKD domain | Interproscan |
| IPR014010 all species → | Domain | REJ domain | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR022409 all species → | Domain | PKD/Chitinase domain | Interproscan |
| IPR046338 all species → | Homologous_superfamily | GAIN domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46730 all species → | POLYCYSTIN-1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005261 all species → | Molecular Function | monoatomic cation channel activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006816 all species → | Biological Process | calcium ion transport | Interproscan |
evm.model.Ap7.2359.Transcript abundance of evm.model.Ap7.2359 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
