Detailed information of evm.model.Ap7.2432 in Astrangia poculata

Genomic Location: Ap7:25680441...25695608
NR annotation: XP_020615902.1, F-box/LRR-repeat protein 4-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9UKA2F-box/LRR-repeat protein 4 OS=Homo sapiens OX=9606 GN=FBXL4 PE=1 SV=2
Q8BH70F-box/LRR-repeat protein 4 OS=Mus musculus OX=10090 GN=Fbxl4 PE=1 SV=1
Q0VD31F-box/LRR-repeat protein 4 OS=Bos taurus OX=9913 GN=FBXL4 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005482 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00535
all species →		Glycos_transf_2Glycosyl transferase family 2FamilyInterproscan
PF12937
all species →		F-box-likeF-box-likeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001810
all species →		DomainF-box domainInterproscan
IPR001173
all species →		DomainGlycosyltransferase 2-likeInterproscan
IPR029044
all species →		Homologous_superfamilyNucleotide-diphospho-sugar transferasesInterproscan
IPR006553
all species →		RepeatLeucine-rich repeat, cysteine-containing subtypeInterproscan
IPR032675
all species →		Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR036047
all species →		Homologous_superfamilyF-box-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11675
all species →		N-ACETYLGALACTOSAMINYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0004653
all species →		Molecular Functionpolypeptide N-acetylgalactosaminyltransferase activityInterproscan
GO:0005794
all species →		Cellular ComponentGolgi apparatusInterproscan
GO:0006493
all species →		Biological Processprotein O-linked glycosylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap7.2432.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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