Genomic Location: Ap7:25717816...25726397
NR annotation: XP_020615881.1, uncharacterized protein CXorf57 homolog isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap7.2436 |
| Transcript |
| evm.model.Ap7.2436 |
| Protein |
| evm.model.Ap7.2436 |
| UniProt accession | Description |
|---|---|
| Q6NSI4 | RPA-related protein RADX OS=Homo sapiens OX=9606 GN=RADX PE=1 SV=2 |
| B2GV47 | RPA-related protein RADX OS=Rattus norvegicus OX=10116 GN=Radx PE=2 SV=1 |
| Q8C779 | RPA-related protein RADX OS=Mus musculus OX=10090 GN=Radx PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009950 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17659 all species → | DUF5521 | Family of unknown function (DUF5521) | Family | Interproscan |
| PF04057 all species → | Rep-A_N | Replication factor-A protein 1, N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR040893 all species → | Family | RPA-related protein RADX | Interproscan |
| IPR007199 all species → | Domain | Replication factor-A protein 1, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14944 all species → | RPA-RELATED PROTEIN RADX | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003697 all species → | Molecular Function | single-stranded DNA binding | Interproscan |
| GO:0005657 all species → | Cellular Component | replication fork | Interproscan |
| GO:0006282 all species → | Biological Process | regulation of DNA repair | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006260 all species → | Biological Process | DNA replication | Interproscan |
evm.model.Ap7.2436.Transcript abundance of evm.model.Ap7.2436 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
