Gene detail

Detailed information of evm.model.Ap7.2505 in Astrangia poculata

Genomic Location: Ap7:26355913...26374566
NR annotation: CAH3147496.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.2505

atggaggcatttataattgatccagctaaactgataggcgatatagtggatttccagtgctttgaggttgagaggtctgcatgtgttcccagagccacttgttccttgtgccccaggctcagccggctaagagggacaagcggctctggggacgagaatggtcattgcacagttgaagtttacatatcagaattaaggaacacctatcagtcttcacagttaccagtgacagacgatgaaacaactcttcataagttctgtgtcaagcttgagacagtgttgagacacgagcaaaaggaaaagtactctcttcttggggtgagaaaagactactggaattttattagtgactgcattcctaaggatgatggagtgaaagttgtacatgccataccccaggtcaaaacatctcaaggcaaaggaagagctttcattcgctactcactggtaaaaaagtcactggcagatgcaattcagagatgcttggtcatgagaaaacagttgagtgcatattatggtcctgaggcaattctgtgccacccctccctgtcaaccgccttgattaacaaactgtatgacttgaacgaccttgagtttgatcttccctgcggtggacatgaacttgacatatcatggccagcattttcaaggagatcctttgtggatggtcaaggttctgtgtctggtcgaagaagcagtatcagtagcatgaccagtgtcgatctaaggaatgaaagaccagatcctttgattgctcttgcatcagaagtctccgcccttaaagcgacttttgtgaaggaaaattctctcggaaaaacagaacacttagaaggcggtttagataatgtgagcatctctgattcaatagtggaaactcctactatcaccgatatgacactggaaatctcgcatcttcaccagcgaattttaaaatggaaagctgagatggaagctcagctatctaaagcttgtagcgaagcgaatagagcgcacgacgatcgaaagtttgcgagtcaagattacgagcttaaaattaaacagctaaatgaacgatacactaatttgacaaaaggtgtctcggaagaaatgaatgcaaaagttaaagaactgttcgtgaagcttactacagccgaaaaggcacttagtgaaagagaagcagaaattgagaaacttaaagaagaagtcaagttgtctgtgagctcgtcacacgaggcacagaggtccgccatcgaacttgaaagacaaattacggcttctgagagaaaacagagcgaattgacttctgaatgcgagcaattaaaagaacggcttaaacgcaaggatgaattgggtggagaattagaaacgaagctgtcagaatttaaagaaaagtgtaacaagcttgaattggccggaacggagtctaacaagaaagtcgcggagctgcaaggagagctgaaagcgaaagaagttgttttagagagagtgcaagaatcgtttgaaaagttgaatggcatggtattcggttcttttgaagaattggagtctgaattgaagagtaggttgatggatagggaacaaggcttgcaaaatcaaagtgctgaaaacagaaggctagaaacgaacatcgtcgagattcaacagcaaaacagagacttaacaaataaactaacaaactcaaatgcgaaaatagaggagttggaaaacgcctgcagtgaatcacaaaatgttattcaagacctcaaaacgcagctaagctctcaggaacgaacacaagaaacatttatgtcagaattgaacgaaacttttcaacttctcgttcaagatcaagatagtccccaagatgaagatgttcaagatggccaccatgttgcgaaggattccagcaaagttattttaaagcaagccaagcatcttgtagcagagatgtcatgccttcataatcaacttcacgagaagagtactcagaaggaacaattagaggagcatatggctgaactaaagggaaacattgaaaagaaaacgattgagattacaactttgaatgaagaagttgacagctcgcgaagaagaatcgaattcattaatgaggaaaaaggagtccttgaaaaggagaaaatggaagcagataacaaacttgcgcttcttgagaaatcggagcagacacttaagtctgatatatcgttagttgttgaagaaaagtgcaaggctttggatgaactgtcacagctgaagggacttcaagacgaggagcagaaactaagatcaagcgcacacgacgaactcacggctctgaaagtgcagcttgaagaaaccgtgcagtccaaacacaaactagaatccgatttggcaagcattacagacacgcttcaaactattgatgccgaaaagaaagacctggatggtcaattgaaaaatttagaagagaaaatgtcttcttgtcaagacgaaaggattggattggaacatgagttggatgttgctaggcaacagctggaagcagccaatgaggcgaggattcgcgcggaacagggtcaggtgaaggcgcaagagcagcttgagagcctgcggtgcatgatggatcaagagatcgcggcgcttaagtttcagcttagctctgagacaataaaatatgaaacagaacttaagagtttgtcagaccaaatccaagagtataacagtgtcaaagaacgcctttcagaacaacaggagttaattacggacctggagactcggttaaaagaacgaaatgatactttacaacacgacaagcacaaatacgtgtcagaaataaagcatctacgaagtgaggtacaacaatacaagagcggatttgacgagaacaagctcaaaatgcgcacattggaaaacgagcttctgctgacagcgaaacagttggaggaagaacgctctaggcagcgagaactgaagaaaaaagttgacgacgtcgaggaggaaaaaggcgcgagcagtgaacagtatgaggcaaaaatagctcaggtcaaggcagacatggaggaattgaaaaacaggctggttgaagtaacgaggtatggtgagaacaaaacttcgtacgatctgttttcttttacttgtgacaaaaacgtgcaacagccgtcaagcacggaaaaacaggaaactgtcgccaagcgcgggaaaacatgcagccaccgcaaaacgcaggaagacaagcaactgccgctagacgcgggaaacgttcaaccgccgccaagcacgggaaacgtgcagccgccgccaagcgcgggaaaacatgcaaccacgcagaaacgtacaaccactgctaaacgcgggaagcgtgcaaccgccgccaagcacgggaaacgtgcagccgccgccaagcgcgggaaaacatgcaaccacgcagaaacagaaaaagctgagctatggaaaaaagccgatgacatggagcatgagatcaaggtgaaagctgacgacagatggatggatgacggtgaagtatctcactgcctcggctgtaaggccgagttctctttcctcttgagaaagcatcattgcagaatatgtgggcgcatcttctgtcacaactgttcaaataactggcttcaaactccacacagcagaaaactccgtcgggtttgcagccattgtttaaattctgataagcgactcaaggcacagttagtaggaagtgcaccggaaacggaagacgatgcaaaatcagatgtcagtgagcgtaccggaagcgtgctgagtgtccgggatgaaagtgacataggaggcctggacgctggtgatggtcccgctgaccctcaacctggtcccagtacctcaaacgccgattttctggacccgccccaatccacctccacccctaaaaagcccgacagaaagaaaagcaatgacaagcagcgaagccagagcgttgccagcgaggacgatcacaaatacaccacgctgaaatctgcaaaaaaggcggaggcaaaggaagcggcaaaaaagcctatcaaaaagacaatcgaaaaaccagcggcacccgactcgtcagaagacgatgatgacgaaggatacgaaattgtagatgaaggcgacgacgatgcgtgcgaacaaccagaagctaaagttgtggtcagtgaaactgacagcagggaggacttggccatacccatggtgaacgaggaaccgggccagttttggcacgtgaccgtaccccctggaaaacgtcacttgattcaggttctgattggaactcccagggcgtcactgtcttggaagtttacaactgagaagaagagcatacgttttggagttgcgttcaagctttcggagacaaagaaagacagcgagtgtgagactgtagtaccgttatcccagtgcaattcgcagctccagtcgatcaagggtgaaatacaagacgtatcgcccggagtgtacctgcttgttttcgataacacattctcaaggtttacgtcgaagcgtttattctgcattgtgcaagtaaaacgaaaagactgtgacggcgaagatgacgaccctgaaacgtag

Transcript

evm.model.Ap7.2505

ATGGAGGCATTTATAATTGATCCAGCTAAACTGATAGGCGATATAGTGGATTTCCAGTGCTTTGAGGTTGAGAGGTCTGCATGTGTTCCCAGAGCCACTTGTTCCTTGTGCCCCAGGCTCAGCCGGCTAAGAGGGACAAGCGGCTCTGGGGACGAGAATGGTCATTGCACAGTTGAAGTTTACATATCAGAATTAAGGAACACCTATCAGTCTTCACAGTTACCAGTGACAGACGATGAAACAACTCTTCATAAGTTCTGTGTCAAGCTTGAGACAGTGTTGAGACACGAGCAAAAGGAAAAGTACTCTCTTCTTGGGGTGAGAAAAGACTACTGGAATTTTATTAGTGACTGCATTCCTAAGGATGATGGAGTGAAAGTTGTACATGCCATACCCCAGGTCAAAACATCTCAAGGCAAAGGAAGAGCTTTCATTCGCTACTCACTGGTAAAAAAGTCACTGGCAGATGCAATTCAGAGATGCTTGGTCATGAGAAAACAGTTGAGTGCATATTATGGTCCTGAGGCAATTCTGTGCCACCCCTCCCTGTCAACCGCCTTGATTAACAAACTGTATGACTTGAACGACCTTGAGTTTGATCTTCCCTGCGGTGGACATGAACTTGACATATCATGGCCAGCATTTTCAAGGAGATCCTTTGTGGATGGTCAAGGTTCTGTGTCTGGTCGAAGAAGCAGTATCAGTAGCATGACCAGTGTCGATCTAAGGAATGAAAGACCAGATCCTTTGATTGCTCTTGCATCAGAAGTCTCCGCCCTTAAAGCGACTTTTGTGAAGGAAAATTCTCTCGGAAAAACAGAACACTTAGAAGGCGGTTTAGATAATGTGAGCATCTCTGATTCAATAGTGGAAACTCCTACTATCACCGATATGACACTGGAAATCTCGCATCTTCACCAGCGAATTTTAAAATGGAAAGCTGAGATGGAAGCTCAGCTATCTAAAGCTTGTAGCGAAGCGAATAGAGCGCACGACGATCGAAAGTTTGCGAGTCAAGATTACGAGCTTAAAATTAAACAGCTAAATGAACGATACACTAATTTGACAAAAGGTGTCTCGGAAGAAATGAATGCAAAAGTTAAAGAACTGTTCGTGAAGCTTACTACAGCCGAAAAGGCACTTAGTGAAAGAGAAGCAGAAATTGAGAAACTTAAAGAAGAAGTCAAGTTGTCTGTGAGCTCGTCACACGAGGCACAGAGGTCCGCCATCGAACTTGAAAGACAAATTACGGCTTCTGAGAGAAAACAGAGCGAATTGACTTCTGAATGCGAGCAATTAAAAGAACGGCTTAAACGCAAGGATGAATTGGGTGGAGAATTAGAAACGAAGCTGTCAGAATTTAAAGAAAAGTGTAACAAGCTTGAATTGGCCGGAACGGAGTCTAACAAGAAAGTCGCGGAGCTGCAAGGAGAGCTGAAAGCGAAAGAAGTTGTTTTAGAGAGAGTGCAAGAATCGTTTGAAAAGTTGAATGGCATGGTATTCGGTTCTTTTGAAGAATTGGAGTCTGAATTGAAGAGTAGGTTGATGGATAGGGAACAAGGCTTGCAAAATCAAAGTGCTGAAAACAGAAGGCTAGAAACGAACATCGTCGAGATTCAACAGCAAAACAGAGACTTAACAAATAAACTAACAAACTCAAATGCGAAAATAGAGGAGTTGGAAAACGCCTGCAGTGAATCACAAAATGTTATTCAAGACCTCAAAACGCAGCTAAGCTCTCAGGAACGAACACAAGAAACATTTATGTCAGAATTGAACGAAACTTTTCAACTTCTCGTTCAAGATCAAGATAGTCCCCAAGATGAAGATGTTCAAGATGGCCACCATGTTGCGAAGGATTCCAGCAAAGTTATTTTAAAGCAAGCCAAGCATCTTGTAGCAGAGATGTCATGCCTTCATAATCAACTTCACGAGAAGAGTACTCAGAAGGAACAATTAGAGGAGCATATGGCTGAACTAAAGGGAAACATTGAAAAGAAAACGATTGAGATTACAACTTTGAATGAAGAAGTTGACAGCTCGCGAAGAAGAATCGAATTCATTAATGAGGAAAAAGGAGTCCTTGAAAAGGAGAAAATGGAAGCAGATAACAAACTTGCGCTTCTTGAGAAATCGGAGCAGACACTTAAGTCTGATATATCGTTAGTTGTTGAAGAAAAGTGCAAGGCTTTGGATGAACTGTCACAGCTGAAGGGACTTCAAGACGAGGAGCAGAAACTAAGATCAAGCGCACACGACGAACTCACGGCTCTGAAAGTGCAGCTTGAAGAAACCGTGCAGTCCAAACACAAACTAGAATCCGATTTGGCAAGCATTACAGACACGCTTCAAACTATTGATGCCGAAAAGAAAGACCTGGATGGTCAATTGAAAAATTTAGAAGAGAAAATGTCTTCTTGTCAAGACGAAAGGATTGGATTGGAACATGAGTTGGATGTTGCTAGGCAACAGCTGGAAGCAGCCAATGAGGCGAGGATTCGCGCGGAACAGGGTCAGGTGAAGGCGCAAGAGCAGCTTGAGAGCCTGCGGTGCATGATGGATCAAGAGATCGCGGCGCTTAAGTTTCAGCTTAGCTCTGAGACAATAAAATATGAAACAGAACTTAAGAGTTTGTCAGACCAAATCCAAGAGTATAACAGTGTCAAAGAACGCCTTTCAGAACAACAGGAGTTAATTACGGACCTGGAGACTCGGTTAAAAGAACGAAATGATACTTTACAACACGACAAGCACAAATACGTGTCAGAAATAAAGCATCTACGAAGTGAGGTACAACAATACAAGAGCGGATTTGACGAGAACAAGCTCAAAATGCGCACATTGGAAAACGAGCTTCTGCTGACAGCGAAACAGTTGGAGGAAGAACGCTCTAGGCAGCGAGAACTGAAGAAAAAAGTTGACGACGTCGAGGAGGAAAAAGGCGCGAGCAGTGAACAGTATGAGGCAAAAATAGCTCAGGTCAAGGCAGACATGGAGGAATTGAAAAACAGGCTGGTTGAAGTAACGAGGTATGGTGAGAACAAAACTTCGTACGATCTGTTTTCTTTTACTTGTGACAAAAACGTGCAACAGCCGTCAAGCACGGAAAAACAGGAAACTGTCGCCAAGCGCGGGAAAACATGCAGCCACCGCAAAACGCAGGAAGACAAGCAACTGCCGCTAGACGCGGGAAACGTTCAACCGCCGCCAAGCACGGGAAACGTGCAGCCGCCGCCAAGCGCGGGAAAACATGCAACCACGCAGAAACGTACAACCACTGCTAAACGCGGGAAGCGTGCAACCGCCGCCAAGCACGGGAAACGTGCAGCCGCCGCCAAGCGCGGGAAAACATGCAACCACGCAGAAACAGAAAAAGCTGAGCTATGGAAAAAAGCCGATGACATGGAGCATGAGATCAAGGTGAAAGCTGACGACAGATGGATGGATGACGGTGAAGTATCTCACTGCCTCGGCTGTAAGGCCGAGTTCTCTTTCCTCTTGAGAAAGCATCATTGCAGAATATGTGGGCGCATCTTCTGTCACAACTGTTCAAATAACTGGCTTCAAACTCCACACAGCAGAAAACTCCGTCGGGTTTGCAGCCATTGTTTAAATTCTGATAAGCGACTCAAGGCACAGTTAGTAGGAAGTGCACCGGAAACGGAAGACGATGCAAAATCAGATGTCAGTGAGCGTACCGGAAGCGTGCTGAGTGTCCGGGATGAAAGTGACATAGGAGGCCTGGACGCTGGTGATGGTCCCGCTGACCCTCAACCTGGTCCCAGTACCTCAAACGCCGATTTTCTGGACCCGCCCCAATCCACCTCCACCCCTAAAAAGCCCGACAGAAAGAAAAGCAATGACAAGCAGCGAAGCCAGAGCGTTGCCAGCGAGGACGATCACAAATACACCACGCTGAAATCTGCAAAAAAGGCGGAGGCAAAGGAAGCGGCAAAAAAGCCTATCAAAAAGACAATCGAAAAACCAGCGGCACCCGACTCGTCAGAAGACGATGATGACGAAGGATACGAAATTGTAGATGAAGGCGACGACGATGCGTGCGAACAACCAGAAGCTAAAGTTGTGGTCAGTGAAACTGACAGCAGGGAGGACTTGGCCATACCCATGGTGAACGAGGAACCGGGCCAGTTTTGGCACGTGACCGTACCCCCTGGAAAACGTCACTTGATTCAGGTTCTGATTGGAACTCCCAGGGCGTCACTGTCTTGGAAGTTTACAACTGAGAAGAAGAGCATACGTTTTGGAGTTGCGTTCAAGCTTTCGGAGACAAAGAAAGACAGCGAGTGTGAGACTGTAGTACCGTTATCCCAGTGCAATTCGCAGCTCCAGTCGATCAAGGGTGAAATACAAGACGTATCGCCCGGAGTGTACCTGCTTGTTTTCGATAACACATTCTCAAGGTTTACGTCGAAGCGTTTATTCTGCATTGTGCAAGTAAAACGAAAAGACTGTGACGGCGAAGATGACGACCCTGAAACGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BQS8	FYVE and coiled-coil domain-containing protein 1 OS=Homo sapiens OX=9606 GN=FYCO1 PE=1 SV=3
Q8VDC1	FYVE and coiled-coil domain-containing protein 1 OS=Mus musculus OX=10090 GN=Fyco1 PE=1 SV=1
Q6ZNE9	RUN and FYVE domain-containing protein 4 OS=Homo sapiens OX=9606 GN=RUFY4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005033 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan
PF02759 all species →	RUN	RUN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR037213 all species →	Homologous_superfamily	RUN domain superfamily	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR004012 all species →	Domain	RUN domain	Interproscan
IPR036598 all species →	Homologous_superfamily	GOLD domain superfamily	Interproscan
IPR009038 all species →	Domain	GOLD domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR047337 all species →	Domain	FYCO1, FYVE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46753 all species →	FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap7.2505.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.